LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium7514g00001	ATGAGTACCGCACAGCAAGAGAAGTTTGTTAGGTTTCGGGATTCCAGTTTGGATAAGAGTTCTGAGGGCAATTATTCTGAGACTAAAATTTCACAGTCAGGGATATTTAGAACTACATTAAGTTCAGTTTCGGAGAAGTTTCAAAATGGATTGGAATCTGGTTCTGATAGGATGAAAAGATTCAGAACATCATTCAAATCTTTTCCCTTTAGTAGTGTTCTTTCTAGAAGCTCTAGTTCTAGAAAGAAAATACTTGATCCACAGGGTCCATTCCTTCAAAGGTGGAACAAGATTTTTGTATTATTATGTGTTATCGCAGTATCACTGGATCCTTTGTTCTTTTATGTCCCGGTTATTGATGATGAGAAAAAATGTCTTTCACTGGACATTAAGATGGAGATTACAGCAACTGTCTTAAGATCTTTCTCTGATGCTTTTTATATAGTCCACATGATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGTGTATTTGGAAGAGGTGTTTTGGTTGAAGATTCTTGGGCAATAGCAAGGAGGTATCTATCATCATATTTCTTAGTTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTGATTCTAGTTATCATTCCAAAGATGAGTGGTTTTAAATCACTTAATACCAAGAACTTGCTGAAATTTGTTGTCTTCTTCCAATATGTGCCTCGTTTATTGCGGATCATTCCATTATATAGAGAAGTTACAAGGGCCTCTGGCATTCTCACTGAAACCGCTTGGGCTGGAGCTGCATTTAATCTCTTTCTTTACATGCTTGCAAGTCACGTTGCTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGAGAAACCACATGTTGGCAAGAAGCCTGTCGAAGTAATGCAACAGTGTGTAACAAGGAAGATATGTATTGCAATGATTATTGGGGTGGGTTGAGCAAAATTTCGACATTCCTGAATACTTCTTGCCCAATTCAGAATGAAGATAAAAATCTCTTTGATTTTGGAATGTTCCTTGATGCTCTTCAATCTGGTGTTGTGGAGTCAAGAGATTTTCCACAAAAATTCTTTTACTGCTTTTGGTGGGGCTTAAAAAATTTGAGTTCTCTTGGTCAGAACCTAGCAACGAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCAATTGCTGGTTTGGTATTATTTGCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACCACAAGATTGGAGGAGATGAGAGTAAAGAGGAGAGATGCAGAACAGTGGATGTCTCACCGATTACTTCCTGACGGCCTGCGAGTGCGAATCAGACGATATGAACAGTACAAATGGCAAGAAACCAGAGGCGTAGATGAAGACAATTTGGTTCGTAATCTTCCCAAGGATTTAAGAAGAGACATTAAGCGACATCTTTGTTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGAACAACTTCTGGATGCAATGTGTGACCGTCTCAAGCCGGTGCTGTTCACCGAAGAAAGCTACATTGTCAGGGAAGGAGACCCAGTTGATGAGATGCTCTTCGTAATGCGTGGTAAGTTATTGACCATAACAACCAACGGCGGAAGAACTGGTTTCTTCAACTCTGAGTATCTAAAAGCTGGTGACTTTTGTGGAGAGGAACTTCTCACATGGGCTTTAGATCCTCACTCCTCATCCAACCTTCCCATATCAACTAGGACTGTCCAAACTCTTTCAGAAGTGGAAGCCTTTGCCCTCAAAGCTGATGACTTGAAGTTTGTGGCGTCACAGTTTCGGCGGCTTCACAGCAAGCAGCTGCGCCACACTTTCCGGTTCTACTCGCAACAATGGCGCACCTGGGCGGCGTGCTTCATTCAAGCGGCGTGGCGGCGGTATAGTAAGAGGAAGCTTGAAGAATCCCTGGTTGAAGAAGAGGAGAATAGACTGCAAAATGTGTTGGCTAAATCAGGTGGAAGCTCACCAAGCCTTGGTGCTACAATATATGCTTCAAGGTTTGCTGCTAATGCACTTACATTGCTTCGCCGTAATGGTGCAAAGAAGGGTAGGGTGCCTGAGAGATTACCGCCTATGCTGCTTCAGAAGCCTGCAGAACCTGATTTTACTGCGGATGAGGAATAG	2160	0.4185	MSTAQQEKFVRFRDSSLDKSSEGNYSETKISQSGIFRTTLSSVSEKFQNGLESGSDRMKRFRTSFKSFPFSSVLSRSSSSRKKILDPQGPFLQRWNKIFVLLCVIAVSLDPLFFYVPVIDDEKKCLSLDIKMEITATVLRSFSDAFYIVHMIFQFRTGFIAPSSRVFGRGVLVEDSWAIARRYLSSYFLVDILAVLPLPQVVILVIIPKMSGFKSLNTKNLLKFVVFFQYVPRLLRIIPLYREVTRASGILTETAWAGAAFNLFLYMLASHVAGAFWYLFSIERETTCWQEACRSNATVCNKEDMYCNDYWGGLSKISTFLNTSCPIQNEDKNLFDFGMFLDALQSGVVESRDFPQKFFYCFWWGLKNLSSLGQNLATSTYVWEICFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDGLRVRIRRYEQYKWQETRGVDEDNLVRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLFTEESYIVREGDPVDEMLFVMRGKLLTITTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESLVEEEENRLQNVLAKSGGSSPSLGATIYASRFAANALTLLRRNGAKKGRVPERLPPMLLQKPAEPDFTADEE	719

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium7514g00001	719	SMART	cnmp_10	489	620	IPR000595	-
	Vium7514g00001	719	Gene3D	Jelly Rolls	487	607	IPR014710	-
	Vium7514g00001	719	Pfam	Cyclic nucleotide-binding domain	510	600	IPR000595	-
	Vium7514g00001	719	SUPERFAMILY	cAMP-binding domain-like	418	611	IPR018490	-
	Vium7514g00001	719	Coils	Coil	642	662	-	-
	Vium7514g00001	719	MobiDBLite	consensus disorder prediction	692	719	-	-
	Vium7514g00001	719	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	65	714	-	-
	Vium7514g00001	719	ProSiteProfiles	cAMP/cGMP binding motif profile.	489	573	IPR000595	-
	Vium7514g00001	719	Gene3D	-	95	413	-	-
	Vium7514g00001	719	Gene3D	Helix hairpin bin	415	480	-	-
	Vium7514g00001	719	Pfam	Ion transport protein	94	416	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Vium7514g00001	719	CDD	CAP_ED	489	620	IPR000595	-
	Vium7514g00001	719	FunFam	Cyclic nucleotide-gated ion channel 1	416	480	-	-
	Vium7514g00001	719	FunFam	Cyclic nucleotide-gated ion channel 1	487	605	-	-
	Vium7514g00001	719	SUPERFAMILY	Voltage-gated potassium channels	86	411	-	-
	Vium7514g00001	719	MobiDBLite	consensus disorder prediction	1	30	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium7514g00001	Vium-Chr7514	19978	28060	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium7514g00001	5	718	Ion Channels	AT5G53130	77.824	0.0	1146

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium7514g00001	K05391		-	gmx:100801032	1289.63