Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7513g00009 ATGGATCGGCCGGCGACCGGAATTGGATTGGACACGCCGATCATGCACGATAGCGACCGTTACGATTTCGTTCGCGATATTGGGTCTGGGAATTTCGGCGTTGCTAGACTTATGAGGGACAAGCAAACGCAAGAGCTTGTTGCCGTCAAGTATATAGAACGCGGAGAAAAGATTGATCAAAATGTTAAAAGAGAAATAATTAATCACAGGTCTCTAAGGCATCCTAACATTATTGGGTTTAAGGAGGTCATTTTAACACCTACCCATCTTGCCATTGTAATGGAATTTGCATCTGGAGGAGAATTATTTGCCCGAATCTGCAATGCAGGGCGTTTTACTGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGTGTCAGTCACTGTCATGCAATGGAAGTGTGTCACCGGGACTTGAAGTTGGAAAACACTTTGTTGGATGGAAGCCCAGCACTCCATTTGAAGATATGTGATTTTGGATATTCCAAGGTAAGCCTTTGTCATGTCCTTTTCATGTGTGAGTTACATTCTAATATATTTTACTGGGATGTAAGCTCTGGCTCAGTAAATTTACCTCTAAATGATTCTTGTCACAAATTTAACTGA 612 0.4199 MDRPATGIGLDTPIMHDSDRYDFVRDIGSGNFGVARLMRDKQTQELVAVKYIERGEKIDQNVKREIINHRSLRHPNIIGFKEVILTPTHLAIVMEFASGGELFARICNAGRFTEDEARFFFQQLISGVSHCHAMEVCHRDLKLENTLLDGSPALHLKICDFGYSKVSLCHVLFMCELHSNIFYWDVSSGSVNLPLNDSCHKFN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7513g00009 203 PANTHER SERINE/THREONINE KINASE 20 172 - -
Vium7513g00009 203 Gene3D Transferase(Phosphotransferase) domain 1 99 183 - -
Vium7513g00009 203 ProSiteProfiles Protein kinase domain profile. 21 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7513g00009 203 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Vium7513g00009 203 SUPERFAMILY Protein kinase-like (PK-like) 14 169 IPR011009 -
Vium7513g00009 203 Pfam Protein kinase domain 21 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7513g00009 203 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Vium7513g00009 203 FunFam Serine/threonine-protein kinase SRK2E 15 96 - -
Vium7513g00009 203 SMART serkin_6 21 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7513g00009 203 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7513g00009 Vium-Chr7513 100387 107367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7513g00009 20 167 CBL-interacting serine-threonine protein kinases AT2G26980 42.763 2.81e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vium7513g00009 Pkinase 5.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7513g00009 K14498 - gmx:100783967 322.398