Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7513g00003 ATGATCCAAGAACTCTTGGGTGCTGCTACTGCTAGCCTTATAGCAGGAGAAACAAAAATCTCCATTAATAATAATGGAGGAGGAGGAGGAGGACGACTTCTACTAACACCACCCGCACCGTCTTCTCCTTCTCCGTCTCCTTCTTGCACAACAACCATCACCACTTCCACTAACACCGCCACTTCTTCCAACTCAGACAACCAAAATTTGAGGTGCCCTCGTTGTGATTCATCAAACACTAAGTTTTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGCTACTGGACCAAAGGTGGCGCTCTCAGGAATGTTCCCATCGGAGGTGGCTGCCGGAAAAGCAAGACCTCCGGCATGTCCAACTCGGTGGGAAAGCAGGCCGCCACAACAAAGATGAAAGCAGTGGCATCGGAGCTTGGAAGGCCACAGGGACTCTTTGACCAAGAGCTTCCACAAACCCCAATCCTTTGGGGCTCACCGCAAAATACTCAACTCATGGCTTTACTAAGAACTACCCAAAGCCAAAGCCAAAACCAAAACCAAAACTCAAACCCTAACCCTAACCCTAGTCTCGTGTCAATTGCCGTCAAGAGAGAAGGGAACTTATCGGAATCTCACTCGCACATGGTCACTGAGTCATTTCTCCCAAATGGGTTGCTGAATAGTACTAGAACTGGTCTAGGATACGATGGTGTGGGAGAACTTCCTTCACTGGGTCTATGCAGCTCCTTTTGGAGGAATAATCAAAATCAGAATCAGCAGCAAAGCAACGGTTTTGTACTTGGAGAACAGCAAAGTGTTGGAGTTCAAGAACTTTACCACAAGTTCAGGTCATCATCGTCAGTTCATTATTGTGGTAGTGATAATTCACCGGTGTTTCTCGGCAACATGCCTTCATCATCTTCTTTGTCCAACATTTTGGAATCATCTTCAGTTTCTGGCAGCGAATTCGGGTGCTGGAATCCAACCCTTTCCTGGGGTGATCTTCCCACAACAAGTGGAGCATATCCTTAA 1038 0.473 MIQELLGAATASLIAGETKISINNNGGGGGGRLLLTPPAPSSPSPSPSCTTTITTSTNTATSSNSDNQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKTSGMSNSVGKQAATTKMKAVASELGRPQGLFDQELPQTPILWGSPQNTQLMALLRTTQSQSQNQNQNSNPNPNPSLVSIAVKREGNLSESHSHMVTESFLPNGLLNSTRTGLGYDGVGELPSLGLCSSFWRNNQNQNQQQSNGFVLGEQQSVGVQELYHKFRSSSSVHYCGSDNSPVFLGNMPSSSSLSNILESSSVSGSEFGCWNPTLSWGDLPTTSGAYP 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7513g00003 345 MobiDBLite consensus disorder prediction 180 200 - -
Vium7513g00003 345 MobiDBLite consensus disorder prediction 29 71 - -
Vium7513g00003 345 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Vium7513g00003 345 MobiDBLite consensus disorder prediction 180 199 - -
Vium7513g00003 345 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 61 267 IPR045174 GO:0003700|GO:0006355
Vium7513g00003 345 Pfam Dof domain, zinc finger 68 124 IPR003851 GO:0003677|GO:0006355
Vium7513g00003 345 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Vium7513g00003 345 MobiDBLite consensus disorder prediction 46 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7513g00003 Vium-Chr7513 37439 39756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7513g00003 38 130 C2C2-Dof Transcription Factor Family AT5G65590 64.211 4.11e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium7513g00003 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7513g00003 - - gmx:100800420 468.388