Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7510g00004 ATGACGAGGAAGAAGGTGGATCTAACATACATAAAGAATGATTCAAAGAGGAAGACAACATTAAACAAAAGGAAAAATGGCTTAGTGAAGAAGATTAACGAAATCAACATTCTTTGTGGGATTGAAGCATGTGCTATAATTTATACTCCAGATAATCCTCAACCAGAGGTTTGGCCATCTGATAGGGCAGTCCAAAGTGTGCTTTCTAGGCTTAGGACAGTGTCTGAACTGGAGAAAGGCAAAAAAAGGTTGTGTCAGGAGAGCTTTTTGAGGCAAAGGATCATCAAAGCACAAGCACAACTGAGAAAACTAAGGAATGAAATAAGGAAGAAAGAGGTGACCCTTCTCATGTTTCAATACCTCAATGCTAATAACAACTTTGACAATTCAAGAATGATTGATCTTAATGATATTTCAAACTTGATTGATCAAAACTTGGAGAAAATAGAAAACAACATCAGCATAAGCCAAGCCCACAAGGTGAAACCTATTGCTGAAAACGGAGGAGAAACCATGAGTTCCCTTGTCAATAGTGTCATACATGTTGAGGCAATGCAACATGATAACTTCTCTATGGACCTTAACAATGGCTATGGTGATGAGATAAAACCATTGGCTGAGGTGGACGAGCCATCAAAATATGGTGTGGTTGTGATGGAAGAGAATTTTAGTGCATTTCAAGGATTTGGGAATTTTACTACTGAGGGAACTACTTTTGGCTTCTCAAATTCAGATTAG 738 0.3808 MTRKKVDLTYIKNDSKRKTTLNKRKNGLVKKINEINILCGIEACAIIYTPDNPQPEVWPSDRAVQSVLSRLRTVSELEKGKKRLCQESFLRQRIIKAQAQLRKLRNEIRKKEVTLLMFQYLNANNNFDNSRMIDLNDISNLIDQNLEKIENNISISQAHKVKPIAENGGETMSSLVNSVIHVEAMQHDNFSMDLNNGYGDEIKPLAEVDEPSKYGVVVMEENFSAFQGFGNFTTEGTTFGFSNSD 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7510g00004 245 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Vium7510g00004 245 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vium7510g00004 245 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Vium7510g00004 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Vium7510g00004 245 PANTHER MADS BOX PROTEIN 3 153 - -
Vium7510g00004 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium7510g00004 245 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Vium7510g00004 245 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Vium7510g00004 245 Coils Coil 87 114 - -
Vium7510g00004 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium7510g00004 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium7510g00004 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7510g00004 Vium-Chr7510 57957 60273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7510g00004 1 155 Type I MADS-box Gene Family AT5G48670 50.323 4.23e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium7510g00004 SRF-TF 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7510g00004 - - vum:124845341 468.774