Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7510g00001 ATGGCGCACAGGTTGCTCAGAGACCACGAAGCCGACGGTTGGGAGCGCTCCGATTTTCCTATTATCTGCGAATCCTGCCTCGGCGACAGCCCATACGTTCGAATGACCAGAGCAGACTATGACAAGGAGTGCAAGATATGTACACGGCCATTCACTGTTTTCAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAATCTGAGATTTGTCAGACGTGCAGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGACCTTGAATATGGACTACCTGTTCAAGTCCGAGACACAGCTCTTCATATTGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAAGGAGTATTTTGCTGAAGAGCATGACCGTAGGGCTAGAGCTGGTATAGATTATGAATCCTCATTTGGTAAAGTACGCCCAAATGATACTATCATGAAGCTTCAAAGGACAACACCATATTACAAGAGGAACCGAGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCGGAGTGCCCTTATAGACACGAGATGCCAGAAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGTTATTATGGAGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGACCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGAGGGATCACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACAACCAGGGAAGGTGCAGAGAAAGCAGCAGAAGAACTCTGCAACAAATTGGTTATTAAGGGCCTAAGGTTAAAGCTGATGTGGGGCAGGCCTCAGACATCAAAACCTGAGTCTGACAGTTCTGATCAAGCAAGGCAGCAGGCATCTGTAGCTCACAGCGGATTGTTGCCTCGGGCAGTTATATCACAGCAGCAGAACCAGGACCAAATCCAAGGAGTGGTTTACTATAACAATCCTCCACCTCCTCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTATTTCATCTCAAGACGGTCCTCCTGGTGGGCCTTCTGGGTCAGGGGAGAACAAGCCTGGTTTGGAAAAGCAGCAGATGCAACATTATCCCCATTCATTGATGCCTCCTCCACCTGGTCAATATCATCATCAGTATTATCCTCCATATGGTTATATGCCTCCAGCTCCCCCTTATCACCATCATCAGTATCCACCTCCATACAATGCTGCAGGGCCTCCATCACAGCCATCAGCAGGAAATCATCCTTATCAGTATTCTATACAGCCAGTGTCTGGACAGGCCACAACTGCCCCAGCTGAAACTGGAACATCAACTTCAGGGTCACAGCAGCAATAA 1446 0.4633 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRADYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALHIDSNDAIPKSDVNKEYFAEEHDRRARAGIDYESSFGKVRPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMTTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELCNKLVIKGLRLKLMWGRPQTSKPESDSSDQARQQASVAHSGLLPRAVISQQQNQDQIQGVVYYNNPPPPQQERSYYPSMDPQRMGALISSQDGPPGGPSGSGENKPGLEKQQMQHYPHSLMPPPPGQYHHQYYPPYGYMPPAPPYHHHQYPPPYNAAGPPSQPSAGNHPYQYSIQPVSGQATTAPAETGTSTSGSQQQ 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7510g00001 481 Gene3D - 212 311 IPR012677 -
Vium7510g00001 481 SMART rrm1_1 229 297 IPR000504 GO:0003723
Vium7510g00001 481 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Vium7510g00001 481 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 376 IPR039171 GO:0003723
Vium7510g00001 481 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Vium7510g00001 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 289 IPR000504 GO:0003723
Vium7510g00001 481 MobiDBLite consensus disorder prediction 300 321 - -
Vium7510g00001 481 MobiDBLite consensus disorder prediction 443 481 - -
Vium7510g00001 481 Gene3D - 148 206 - -
Vium7510g00001 481 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Vium7510g00001 481 MobiDBLite consensus disorder prediction 401 442 - -
Vium7510g00001 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Vium7510g00001 481 MobiDBLite consensus disorder prediction 343 481 - -
Vium7510g00001 481 SUPERFAMILY RNA-binding domain, RBD 222 308 IPR035979 GO:0003676
Vium7510g00001 481 MobiDBLite consensus disorder prediction 303 320 - -
Vium7510g00001 481 Pfam Torus domain 154 194 IPR032297 -
Vium7510g00001 481 CDD RRM_RBM22 227 300 - -
Vium7510g00001 481 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Vium7510g00001 481 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7510g00001 215 289 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 9.08e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7510g00001 K12872 - gmx:100779917 833.558