Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7502g00027 ATGGCTTCCGCAGTGTTTGTGAGTTTCAACGATGAAGACACACGCGACATCACAGCTTTTGTTCTTGATCCTCTCAGAAGTAGAGGCATCCAAGTCTTCGTTAAAGGTGAATCCACAACTTTTGACCTGTTTCAAGCGATTCAACGCTCTCGCCTTTTGATCGTGGTCTTTTCCAAGAACTACGCTTCCTCAATTTGCTGTTTGCGTGAATTAGTGGCGATCATCAATGTTGTTGAATCTTCTCCGAGGATCGTTCTGCCTATTTTTTTTGGTGTCCATCAATCTAACGTGCTGTTTCAGAATGGATGTTATGTGCAAGTTTTTTCCAAACACGAAGAAAGATTCAGGGAACACAAGCAGAGGATGGAAGAAGTGCAGAGATGGAGAGAAGCTCTCACACGAGTGGCCTGTTTCCCGGGTTGGCATATGAAAAATGCGAAAGGAGTTGAAGTTCGTGGTTTTATTAACTATGCAGTCGATATTTTGAATCGTGAATTTTCAACTCCTCAAAATGAAACAATATTGAATAGATATGGAAAATTTGAAGATATTGTTCAATATAAAGATGGAGATGAAGTTTCATACAAGGAGCTGCGAGGTTTGATTAGGTTAAGGGATTTTATCAGCCTCGTGTTGACATATCCAGTGAAATTAGAAGAGGACGGTGTATTAAGATCCTGGATTAGTGCATTTGCTGAATGGAAAGCTCAGTTACTTTCCACTGATGGTTTTTCTGTGATTTGCAAACCATGGAGTCTACTAACTGAAAAGGCACTGAGATGCATGAAAGGATTCATGCCAGAGGAAATAATGGCTGAAATAGAAAGTGGCGAGAGATCCCTCTTCAACCGCCATAATGATGTAATACCAGAAGGCCTTCTCCCCCTAAGTGTTGATCTCGCAGTTGACCAACTAATTCAAACTTTGTTTTCTGGAGATTACTGTGCGCGCTATATCAGATTGTTGACCAGAAACTCGTCTGAAAAAGAATCTGTAGTAAACAAAATACATACAGCCTTGGAAGATAAACACAACATGTTTGGAAATGACAAAGATTTTCTGATGGCCGTATGGATCAATGCCTTAACATGTGAGACTGATGCGGAGGTTCACGTTCAAGAAGAAATCAATAAGATCATGGTGAGTATTTCTATGACAGAAGGTGATGACATGTTAACTACACTAGACACTGACAAAAAGAAGAGCAGCAATAGGCTGTTGGTGATTGTAGTGGATGCAGATAGCAACAGGAAGCTGGACCTCCAAAAAGTGCAATTTCCAAGTGGGATAGTGGTGTTGATAGCAACTGAGTCTTCAACACAAGCAGCGGTGAAGGATGATGACTTTGGAATTGCATGCACAATGGATTTGAATATTTGGACCCAGGATCATATGTTGCCTTGGAAACTCTTCTATACCTATGTGGGAAGCTTTATCAGCTGTAGCACAGTGGGTTCATCAATGACCATTCAGAAGATAGCGGTGGAAATAGTGAAGAAAAGCCATGGCCATCTTCTTGCCATTGTCCTTGTGGCAAAACATCTTAGGTATGTGAAAGATGATAAATACTGGGAGCTTGTACTTGACAAATTAAGCAACCCGAATCCTTTGTATGATTATCAAGATTGTGACCGAATTGGCATTAGTAGAGTCATGGTCAATGCATTTGTAAATATTATTTGGGAAGACATCGATGATGAACTAAAGCTTTGCCTCCAACTCAGTTTACCTGTTCACAACATTAAGAATGGGGTGAGAGATGATATCTTGGTTTCTTATTGGGCTAATATATTACGATACACACAAGAGCTTGGTGAATACAAGAGACAGTTACAATATTACCTCGAGGAGCTTCTAGACTGTTTTCTCTTGTTGAAATTTGAAAGTAGAGATGTCTGTTTGCCAATAGAAACCTATGATATAATTAAATCATTACACATCTCAGAACCTTCCATCATATGGGATGGTGCATTAGGATTGACGGAGATTGGACAATGGCATAGTCTTATTCAGATAGAATTGGTTAACAATAAAATATGTGAACTACCACAATCACCAGGCTGCCCCAAACTCAAAGTGTTGTTGTTGCAGGGCAATGCTGATTTATTGGATATCCCTGATTCATTTTTCGACCACATGCCTCTACTTCAACACTTGGACTTATCCTACACTAGTATAAGGGATTTGCCCCCTTCTCTCGCCAAATTGATGCAACTTAAGAAACTATATCTTAAAGGTTGTGATCTCTTCATGGAAATATCCCCGCAAATTTTTCAGCTGAAGAATCTCGAAGAGCTTGATCTTCACGGGACTTTGATAACCCATTTGCCAAAAGACATTCAAGAATTGATCAACCTGCAACGCTTAGCCCTATGCTTTGATGCATACCATCATGTACTTAGTCGTGGTAAAAGAGGCAAGCAGATTTTTAACACAACGATAATTCCTCGTGGAGTGATATCAAATCTTACTCAGTTGAATTATCTAAGCCTTGACGTCGACCCTGAAGATGAGCAATGGAGCGAGAACGTTAATAGTGTCTTGGTGGAAATTTTGGGACTAGAGAAGTTGAAGACGGTGAGCATGTATGTTCCAAAGGCTGATCTCTTGGAACTCGTACCGGCCGAAAAATCTCTCAATTTCCGATTGGTTGTTGGTCATCACATGCGGCGTCTAATATCCCGGGTAACACCTGAACTAGAGACAAAATTCAAAGATTTTGATCATAGCATGAAGTTTGTTAATGGTGTAAATGTTCCCAAAGGAGTAAAGATGAATCTTGGTCGCTTCAAGGCTTTGTATCTTGACCGACATATGACCATCAAGAGTCTTTCAGATTTCAATTTGAACAACGTACGCAGGTTGAAAGTTTGCATATTGGCGGAATGTAATGAAATGGAAACAATTGTCGATGGTGATGAACCTTTTTCTCTAAAGTTGGAGTTGTTGAGTGTATTTTATATGAAGAATTTAAGAAGCATTTGCCAAGGGTGTGGTTCCTTTTCCTACTTAAAGTATATGGCATTGCACACTTGCCCCATGTTAACTACTATCTTCACCTTACGTACTTTTATCAGCCTTCCCTTTTTGGAAGAGATTCATGTTGAAGATTGTCCAAAAGTAACCACCCTAATAAGTGATGACTCACCAAAACGTAAAGCAGCGTTTTTCCTGCCGTTGAGAGTGATATCGCTTCTTTATCTTCCCAACTTGGTGAATATTTTTAATGGCCTGCCTGTTGAACATGTTTTAGAAGAAATGATTTTTTATTGTTGCCCAAAACTCCAAAGTCTTTCCAGGTCGGAGTTAGCATGGGAATATTTGAAGTTTATCAAAGGAGAAAGGATGTGGTGGGAAGCATTGGATTGGAGTGTATCAGAGTGGGGTAACGCTGGTCGACCCTTCTTTGAGCAATTTTTTAAACCAATTAATGTGGAGGCTGACATGATGAACCCATCAGCTGCACAACTAAATAAATATCACGGCGGAATGTATCAGGGAGTTTCAAGTTCTACCGAGTTGACGACGAAGTTACATTTGGAAACGCCTCTTTGGTTGCCTTCAACTCCATTTCCGTTATCGAGTAGTAAAGAAGGTGAAGCCCAAAAGCGAAAAGCCGTTATTGAGCCAATAATAGTACCACCGTTGTTAAGAAGGAAACCAAACCAGGATCGTGAAGCTGTGAAAATATTGATACATAATGATCAGAGTTTAGATGATGGATTTACCTGGAGAAAATATGGGCAGAAGGACATTCTTGGATCTAAGTATCCGAGATCATATTACCGCTGCAATGAACGTGGGTGCAAAGCAACAAGACAAGTTCAAAGGTTAGATGACCAAAGAACGATTGAGGTAAATTACATAGGAACTCATAGTTGCCCCCGTAAACAGGATTTGATCGCTGAAAGTGGAGACATAAAAGTATTACAAGATTTTCGGGGAAAACCAGATTCTCCATCATCTAGCAACAAAAATGCTATCATTGTTTTGAAGGAAATACCAGAAAATAGAGAAGTATCAGCTGAACGAGGAGTCTCAGCTGAACGAAGAGTCTCAGATGAACGAATGAACGAAGAGTATCAACTGAACTAG 4095 0.3998 MASAVFVSFNDEDTRDITAFVLDPLRSRGIQVFVKGESTTFDLFQAIQRSRLLIVVFSKNYASSICCLRELVAIINVVESSPRIVLPIFFGVHQSNVLFQNGCYVQVFSKHEERFREHKQRMEEVQRWREALTRVACFPGWHMKNAKGVEVRGFINYAVDILNREFSTPQNETILNRYGKFEDIVQYKDGDEVSYKELRGLIRLRDFISLVLTYPVKLEEDGVLRSWISAFAEWKAQLLSTDGFSVICKPWSLLTEKALRCMKGFMPEEIMAEIESGERSLFNRHNDVIPEGLLPLSVDLAVDQLIQTLFSGDYCARYIRLLTRNSSEKESVVNKIHTALEDKHNMFGNDKDFLMAVWINALTCETDAEVHVQEEINKIMVSISMTEGDDMLTTLDTDKKKSSNRLLVIVVDADSNRKLDLQKVQFPSGIVVLIATESSTQAAVKDDDFGIACTMDLNIWTQDHMLPWKLFYTYVGSFISCSTVGSSMTIQKIAVEIVKKSHGHLLAIVLVAKHLRYVKDDKYWELVLDKLSNPNPLYDYQDCDRIGISRVMVNAFVNIIWEDIDDELKLCLQLSLPVHNIKNGVRDDILVSYWANILRYTQELGEYKRQLQYYLEELLDCFLLLKFESRDVCLPIETYDIIKSLHISEPSIIWDGALGLTEIGQWHSLIQIELVNNKICELPQSPGCPKLKVLLLQGNADLLDIPDSFFDHMPLLQHLDLSYTSIRDLPPSLAKLMQLKKLYLKGCDLFMEISPQIFQLKNLEELDLHGTLITHLPKDIQELINLQRLALCFDAYHHVLSRGKRGKQIFNTTIIPRGVISNLTQLNYLSLDVDPEDEQWSENVNSVLVEILGLEKLKTVSMYVPKADLLELVPAEKSLNFRLVVGHHMRRLISRVTPELETKFKDFDHSMKFVNGVNVPKGVKMNLGRFKALYLDRHMTIKSLSDFNLNNVRRLKVCILAECNEMETIVDGDEPFSLKLELLSVFYMKNLRSICQGCGSFSYLKYMALHTCPMLTTIFTLRTFISLPFLEEIHVEDCPKVTTLISDDSPKRKAAFFLPLRVISLLYLPNLVNIFNGLPVEHVLEEMIFYCCPKLQSLSRSELAWEYLKFIKGERMWWEALDWSVSEWGNAGRPFFEQFFKPINVEADMMNPSAAQLNKYHGGMYQGVSSSTELTTKLHLETPLWLPSTPFPLSSSKEGEAQKRKAVIEPIIVPPLLRRKPNQDREAVKILIHNDQSLDDGFTWRKYGQKDILGSKYPRSYYRCNERGCKATRQVQRLDDQRTIEVNYIGTHSCPRKQDLIAESGDIKVLQDFRGKPDSPSSSNKNAIIVLKEIPENREVSAERGVSAERRVSDERMNEEYQLN 1364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7502g00027 1364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 572 IPR027417 -
Vium7502g00027 1364 Gene3D WRKY domain 1225 1296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium7502g00027 1364 SUPERFAMILY L domain-like 663 1042 - -
Vium7502g00027 1364 ProSiteProfiles WRKY domain profile. 1233 1297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium7502g00027 1364 Pfam TIR domain 5 141 IPR000157 GO:0007165
Vium7502g00027 1364 SUPERFAMILY WRKY DNA-binding domain 1234 1296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium7502g00027 1364 Gene3D Ribonuclease Inhibitor 657 1110 IPR032675 -
Vium7502g00027 1364 Pfam WRKY DNA -binding domain 1239 1295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium7502g00027 1364 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 144 IPR035897 -
Vium7502g00027 1364 Gene3D - 467 544 IPR042197 -
Vium7502g00027 1364 SMART WRKY_cls 1238 1296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium7502g00027 1364 SMART till_3 2 138 IPR000157 GO:0007165
Vium7502g00027 1364 Pfam Leucine rich repeat 689 749 IPR001611 GO:0005515
Vium7502g00027 1364 ProSiteProfiles TIR domain profile. 1 155 IPR000157 GO:0007165
Vium7502g00027 1364 SMART LRR_typ_2 760 783 IPR003591 -
Vium7502g00027 1364 SMART LRR_typ_2 713 736 IPR003591 -
Vium7502g00027 1364 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 302 1132 - -
Vium7502g00027 1364 Gene3D - 2 170 IPR035897 -
Vium7502g00027 1364 MobiDBLite consensus disorder prediction 1339 1364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7502g00027 Vium-Chr7502 166875 180988 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7502g00027 1195 1300 WRKY Transcription Factor Family AT5G24110 42.982 9.89e-21 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium7502g00027 TIR 6.4e-22 CL0173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7502g00027 - - vum:124825720 2274.2