Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium74g00003 ATGAACCGGGATCAGTTGTTTGTTTCTCATTTTTATGGTTTCTCGTTGTTGCAACACAGGTCAAGATCTCTGCCAGACTCTAAAATTTTTTTAACAATCCTTTCACAATGCACTGATGTTTCTGGAGTCACAAACAAGGTCACTCCTCCTCCTTGCCAATCATTGCCAGAGAAAGAGCAACTCCAATGTCTTCTTCCAACCAAAAACACAAACTCTTCCAACCAAAAACACAATCACAGAAACGGAGAAAATCCAACGCCTAAACGCCACCACGCCGCCGCCGCCGCATCCTCGCCGCTCCATCATCGCAGCCGCCATCGCAGTACCGTCGTTGCTCTCTCGCGGCATCGTCGCGGGCTCTCTCGCCGCCTCACCGTCGCGGGCTCTCTCGCCTCACCGTCACAGGCTCTCGCCGCACCATTGCGAGCTCTCTCTTCTTCTTGGCCGTGGGCACCGTCTTGGGTTAGAGATCTTATTGATACACAGAAAGTGGAAGCAATTATAGGACCTGATACATGGAAAGAGACAACTTTAGTGGCTGATATTTGTAGCCAAAATCATGTTTTGGCCATCCCTCCGTTAAGCTCCTCTTCACTGCCTCAAGAACTAGAGAAACTTAGGAATGGCTATTGCAGAGTTTTGTTGTTAATTTGTCAGTTCCTTTGGGCCATAAACCTATTTCAAACTGCAAAGAAATTGAAAATGATGGAGAAAGGTTATGTGTGGATCGTTACTGATCCTCTTACAAATCTTGTCCATTCATTGAACTCTTCTACTATATCATCAATGCAAGGGATAGTTGGAGTAAAGAGCTACTTCCCAGAAATAGGGCTTCAATACGAGGACTTCTACTCTAAATTTAGAAAAAAGTTTAGCTTAGAGAACCCTCATGAGCTTAATAATGAGCCTGGGATATTTGCAGCACGTGCTTATGATGCTGCATGGACTCTAGCTCTATCCATGATCCAAACAACCAACAAAAAAGATCAAACGTTACTGGATAAGATCATCAATGTGATGGGGAAAGATTATAAGAAAATTTGGGTTCTGGACAAAGGGACTAGGTTTCTCAAATACTATAGGCCAAAATGCTGCTTTCAATTCTTCAATGAGGAACTTGGACAAGTTTTATGGCCAGGAAGACCTTGGGGAATACCAAGAGGATGGATTCCAGCATTGGATAAACCACTTAGAATTGGGGTCCCCGTTTTGGCCACATTGAAACAATCCGTAACTGTAATTCACGACCAAACAGAAAATACCACCACGTTCCAAGGATTCACCATTGATCTTTTTAGAGAAACTATGGAGTTGTTGCCCTATCACTTGCCCTACAAATTCTATCCTTTCAATGACACGTACGATAATTTGGTGAAGCAAGTTTATTTGAAGAACCCCAATTTTCCCAATCAGAACTCAGATCCCAATTTTTCTTCTGTTTCTCCACTCCCGTCCCCCTCCTTTCCTCTCTGCAACCCTTCCTTTCTCCACTCTCGTCTCCCTCCCTTCTTCTCCTACAACCCTTCCTTTATCCACTCTCCTCTCCCTCAACTCCACCATTCCCTCACCACCCTCTTCTCCCCCCCATCCCCAAAACGATATTGGTTCTTAGGGTTTTGGCACTCAGAGGTGGAGGCAGCTGTAGGACCTGCGACGTACCCCAAGACGGTGCCCACGGCCAAGAAGAGAGAGAGCTCGCAATGGTGCGGCGAGAGCCTGTGA 1722 0.4564 MNRDQLFVSHFYGFSLLQHRSRSLPDSKIFLTILSQCTDVSGVTNKVTPPPCQSLPEKEQLQCLLPTKNTNSSNQKHNHRNGENPTPKRHHAAAAASSPLHHRSRHRSTVVALSRHRRGLSRRLTVAGSLASPSQALAAPLRALSSSWPWAPSWVRDLIDTQKVEAIIGPDTWKETTLVADICSQNHVLAIPPLSSSSLPQELEKLRNGYCRVLLLICQFLWAINLFQTAKKLKMMEKGYVWIVTDPLTNLVHSLNSSTISSMQGIVGVKSYFPEIGLQYEDFYSKFRKKFSLENPHELNNEPGIFAARAYDAAWTLALSMIQTTNKKDQTLLDKIINVMGKDYKKIWVLDKGTRFLKYYRPKCCFQFFNEELGQVLWPGRPWGIPRGWIPALDKPLRIGVPVLATLKQSVTVIHDQTENTTTFQGFTIDLFRETMELLPYHLPYKFYPFNDTYDNLVKQVYLKNPNFPNQNSDPNFSSVSPLPSPSFPLCNPSFLHSRLPPFFSYNPSFIHSPLPQLHHSLTTLFSPPSPKRYWFLGFWHSEVEAAVGPATYPKTVPTAKKRESSQWCGESL 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium74g00003 573 PANTHER OS06G0188250 PROTEIN 195 358 - -
Vium74g00003 573 SUPERFAMILY Periplasmic binding protein-like I 150 337 IPR028082 -
Vium74g00003 573 Gene3D - 395 468 - -
Vium74g00003 573 Gene3D - 169 394 - -
Vium74g00003 573 MobiDBLite consensus disorder prediction 100 114 - -
Vium74g00003 573 Pfam Receptor family ligand binding region 201 337 IPR001828 -
Vium74g00003 573 MobiDBLite consensus disorder prediction 68 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium74g00003 Vium-Chr74 48905 52568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium74g00003 192 463 Ion Channels AT5G27100 29.664 8.02e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium74g00003 - - vum:124836744 1103.58