Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium749g00001 ATGGAGAATAGGGTACCCTTCTTCATCTTCCTGTCCTCTTTCTCATTCACGCTGCTACTTCTCTTGCACCTTTCTTCTGCTCAGATTCCAGGTTTTGTGAGTCTGGACTGTGGTGGTAAAGAAAATTTCACTGACGAAATTGGTCTTCCATGGACTCCTGATGAACTTAGGTATGGAGACATAAGCACTATATCAGTTGCAAATGAGACACGGAAGCAATACACAACAGTACGACATTTTCCTGCTGATTCTAGAAAATACTGCTACTCACTTGATGTTGTTAGTAGGACAAGGTACTTACTGAGGGCGTCGTTCTTGTATGGGAACTTTGATGCAAACAATGTTTATCCAAAATTTGACATTTTTGTTGGTGCTACTCATTGGTCGACTATAGTTATATCTGATGCTAACACCATAGAAATGAGAGAGCTCATATTTCTGGCTTTAAGTCCTACAGTTAGTGTATGTTTATCAAATGCAACAACTGGAAAGCCATTCATATCTACTCTTGAACTCCGGCAATTCAATGGTTCAGTTTATTATACATACACCGAGGAACACTTTTACCTCAGTGTATCCGCCAGGATAAATTTTGGTGCAGATAGTGATGCTCCAATCAGGTATCCTGATGACCCATTTGATAGAATTTGGGAGTCAGATTCTATCAAGAGAGCAAACTATCTTGTCGATGTTGCTGCAGGAACTAGGAAAATTTCCACCAACAAATCAATTGAAGTTAGCAGTGATGAAATGCCTCCAATGAAAGTAATGCAGAGTGGTGTAGTGGGCACAAATGGATCTCTAACTTACAGGTTGAACTTGGATGGTTTTCCTGGTTTTGCGTGGGCAGTCACCTATTTCGCAGAGATTGAAGATTTGGCTGAAAATGAATCCAGGAAATTCAGACTAGTACTTCCTGGTCATCCGGATATTAGTAAGCCTGTAGTAAATATTGAAGAAAATGCTCCAGGAAAATATCGCCTCTATGAACCAGGATATACCAATTTATCCTTACCCTTTGTTTTGTCATTTAAATTTGCCAAAACATCTGATTCTGCCAGGGGCCCTCTTCTAAATGCCATGGAGATTAATGAGTATTTGGAGAAAAATGACGGCTCTCCTGATGGAGAAGTTATATCTAGTGTACTTTCACACTACTCCTCAGAAGAATGGGCACAAGAAGGCGGTGATCCTTGTCTACCTGTTCCATGGTCATGGGTCCGCTGTAGCTCAGATCAACAGCCAAAAGTAGTTTCAATTTTGTTGTCCAATAAAAACTTGACGGGCAATATTCCTTTGGAGATAACCAAACTCACTGGTCTGGTTGAACTATGGCTCGATGATAACATGTTGACTGGCCCAATACCAGATTTCACAGGATGCATGGACTTAAAGATCATTCATCTTGAGAACAACCAGTTGACAGGTGCGCTCCCAACATCTTTGGTGAACCTTCCAAACTTGAGGGAATTGTATGTCCAAAATAATATGTTATCCGGAACTGTACCATCGGATCTTCTGAAGAAAGTTTCTTTTCTAAACTACTCTGGAAACGATAATCTTCGTAAAGATAGCAGAAAAAAGACACCCTTGTATGTGATTATTGGTGCATCAGTTGGAGCTGCTGTTCTGCTTTTGGCCACTATTATATCATGCTTGTTTAAGCATAAAGGAAAAAACAGATATTACGAACAAAACAGCCTTGTTTCCCACCCTTCTCAAAGTATGGAGCCTACTAAAAGCATTGGTCCTGCAGAAGCTGCACATTGCTACAGCTTTTCTGAAATCGAAAAATCTACAAATAATTTTGAGAAAAAAATTGGTTCCGGTGGTTTTGGAGTTGTTTACTATGGAAAACTGAAAGATGGAAAAGAGATAGCAGTTAAAGTTCTAACCAGTAATTCCTACCAGGGCAAACGAGAGTTCTCCAACGAGGTGATTCTTCTGTCAAGAATACATCATAGAAACTTGGTACAGCTTCTCGGCTATTGTCGAGAAGAAGGAAATAGCATGCTCATTTATGAGTTCATGCATAATGGAACTCTCAAGGAACATCTTTACGCCCCATTAACACACGGACGGAGTATCGATTGGAAGAAGCGCCTAGAGATTGCAGAAGACGCTGCAAAAGGGATTGAGTATCTCCACACAGGCTGTGTTCCTGCAGTCATCCACAGAGACTTGAAAAGCAGCAACATTCTTCTTGACCGACAAATGAAAGCCAAGGTTTCAGATTTTGGTCTTTCAAAACTTGCTGTGGATGGGGCATCCCATGTTTCTAGCATAGTACGAGGAACAGTAGGATATTTGGATCCTGAGTACTACATTTCTCAGCAGCTTACTGACAAGAGTGATATTTATAGTTTTGGGGTAATTCTTCTTGAACTCATATCTGGTCAAGAAGCAATATCCAATGACAACTTTGGTGCTAATTGCAGAAACATAGTCCAATGGGCAAAACTACACGTTGAGAGTGGAGACATACAAGGTATCATTGATCCCGTGCTGCAGAACAAATATGACCTGCAATCAATGTGGAAAATAGCAGAGATAGCATTGATGTGTGTTCAACCACATGGACACATGCGGCCATCAATTTCAGAAGTTCTGAAGGAGATACAAGATGCCATTGCTATTGAAAGAGGCTCCGAAGGAAATTCGGATGAGCCAAGAAATTCGGTTCATTCTTCGGTCAACATGGATTTGGTTGCTCCTCAGAGCTTCCTCTCAATTGATGATTCCATTGCACAACCTACCGCACGATAG 2766 0.4082 MENRVPFFIFLSSFSFTLLLLLHLSSAQIPGFVSLDCGGKENFTDEIGLPWTPDELRYGDISTISVANETRKQYTTVRHFPADSRKYCYSLDVVSRTRYLLRASFLYGNFDANNVYPKFDIFVGATHWSTIVISDANTIEMRELIFLALSPTVSVCLSNATTGKPFISTLELRQFNGSVYYTYTEEHFYLSVSARINFGADSDAPIRYPDDPFDRIWESDSIKRANYLVDVAAGTRKISTNKSIEVSSDEMPPMKVMQSGVVGTNGSLTYRLNLDGFPGFAWAVTYFAEIEDLAENESRKFRLVLPGHPDISKPVVNIEENAPGKYRLYEPGYTNLSLPFVLSFKFAKTSDSARGPLLNAMEINEYLEKNDGSPDGEVISSVLSHYSSEEWAQEGGDPCLPVPWSWVRCSSDQQPKVVSILLSNKNLTGNIPLEITKLTGLVELWLDDNMLTGPIPDFTGCMDLKIIHLENNQLTGALPTSLVNLPNLRELYVQNNMLSGTVPSDLLKKVSFLNYSGNDNLRKDSRKKTPLYVIIGASVGAAVLLLATIISCLFKHKGKNRYYEQNSLVSHPSQSMEPTKSIGPAEAAHCYSFSEIEKSTNNFEKKIGSGGFGVVYYGKLKDGKEIAVKVLTSNSYQGKREFSNEVILLSRIHHRNLVQLLGYCREEGNSMLIYEFMHNGTLKEHLYAPLTHGRSIDWKKRLEIAEDAAKGIEYLHTGCVPAVIHRDLKSSNILLDRQMKAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDIYSFGVILLELISGQEAISNDNFGANCRNIVQWAKLHVESGDIQGIIDPVLQNKYDLQSMWKIAEIALMCVQPHGHMRPSISEVLKEIQDAIAIERGSEGNSDEPRNSVHSSVNMDLVAPQSFLSIDDSIAQPTAR 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium749g00001 921 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 677 885 - -
Vium749g00001 921 PANTHER OS07G0107800 PROTEIN-RELATED 464 877 - -
Vium749g00001 921 SUPERFAMILY Protein kinase-like (PK-like) 581 871 IPR011009 -
Vium749g00001 921 ProSiteProfiles Protein kinase domain profile. 601 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium749g00001 921 ProSitePatterns Protein kinases ATP-binding region signature. 607 629 IPR017441 GO:0005524
Vium749g00001 921 SUPERFAMILY L domain-like 402 521 - -
Vium749g00001 921 FunFam Leucine-rich repeat protein kinase family protein 376 529 - -
Vium749g00001 921 SMART serkin_6 601 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium749g00001 921 Pfam Protein tyrosine and serine/threonine kinase 603 872 IPR001245 GO:0004672|GO:0006468
Vium749g00001 921 CDD STKc_IRAK 607 874 - -
Vium749g00001 921 Gene3D Transferase(Phosphotransferase) domain 1 677 897 - -
Vium749g00001 921 FunFam Leucine-rich repeat receptor-like protein kinase 578 676 - -
Vium749g00001 921 Gene3D Phosphorylase Kinase; domain 1 575 676 - -
Vium749g00001 921 Gene3D Ribonuclease Inhibitor 378 529 IPR032675 -
Vium749g00001 921 Pfam Malectin-like domain 35 363 IPR024788 -
Vium749g00001 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium749g00001 Vium-Chr749 44117 49023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium749g00001 25 711 Receptor kinase-like Gene Family AT2G37050 68.058 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium749g00001 Malectin_like 6.8e-74 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium749g00001 - - gmx:100798007 1659.04