Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7496g00001 CACCCCGGAGAGAACGCAAGGAGGAGAGACCCTAGGAAGTTTCATTACAGCTGTGTGCCGTGCCCTGATTTTAGGAAAGGGGCTTGTAGGCGAGGAGACATGTGTGAATATGCTCATGGAGTGTTTGAGTGCTGGCTTCACCCGGCTCAGTATCGGACACGGCTTTGCAAAGATGGTACTAGCTGCAATCGTAGGGTGTGTTTTTTCGCTCACACTGCAGAGGAGCTGCGTCCACTGTATGTATCCACCGGATCTGCTGTTCCTTCACCACGGTCATCGGCCTCGGCTGCTAATGTCATGGACATGGCTGCTGCGATGAGCCTTCTGCCGGGTTCGCCTTCGTCTGTATCTTCCATGTCGCCATCTCACTTTGGGCAACCGATGTCCCCATCTGCCAATGGCATGTCACTTTCCTCTGGTGCTTGGGCACAGCCAAACGTGCCTGCTCTTCATTTACCAGGAAGCAATCTTCAATCTAGCCGATTGAGGTCTTCCCTTAGTGCACGAGACATTCCACCCGAAGACTTGAACGGAATGCTTGATCTTGATGGCCACCAGCACCCTTTAAATGACTTGAGCTGTTACTTACAGCCTCGCCCTGGTACTGGCTCTGTGAGTCGATCTGGTCGGTCCAAGACCCTAACTCCAGCAAATCTGGAAGAGCTCTTTTCTGCTGAAATTTCATCGTCTCCCCGGTATTCGGATCCAGCAGCGGCGTCTGTGTTTTCTCCAACCCACAAATCAGCTGTTCTCAATCAGTTTCAACAGATACAGAACATGTTATCGCCAATTAATACTAATTTGCTTTCTCCAAAGAGCGTTGACCATCCTCTTTTACAGGCCTCCTTTGGTGTCTCTTCGTCTGGAAGGATGTCACCAAGAAGTGTGGAACCAATCTCACCGATGAGCACGCGCATGTCGGCGTTTGCTCAGCGTGAGAAACAGCAGCAGCAGCAGCTACAGCTGCGAAGTTTCAGTTCAAGGGACCTTGGTGCCAACAGTCCTGCCTCAATTGTTGGCTCCCCTGTAAACGGTTGGTCCAAGTGGGGATCTCCTAATGGAAAAGCTGATTGGTCAGTAAATGGAGACGAGCTTGGTGGTAAGATGCGAAGGTCGTCCTCATTAGAGCTTAAGCACAATGGCGAAGAGCCTGATCTGTCATGGGTCCAGTCTCTGGTGAAGGAATCCCCACCTGAGATGATGAAAGAGAAGTTTGCTTCTCCTCTGCCCACAGCACCATCAGCGGATGGACCAAATTCTAATCCTCAAATTGAATCCATTGATCATTCCGTTTTAGGAGCCTGGCTTGAGCAAATGCAACTGGATCAGCTTGTAGTCTAG 1341 0.5063 HPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAANVMDMAAAMSLLPGSPSSVSSMSPSHFGQPMSPSANGMSLSSGAWAQPNVPALHLPGSNLQSSRLRSSLSARDIPPEDLNGMLDLDGHQHPLNDLSCYLQPRPGTGSVSRSGRSKTLTPANLEELFSAEISSSPRYSDPAAASVFSPTHKSAVLNQFQQIQNMLSPINTNLLSPKSVDHPLLQASFGVSSSGRMSPRSVEPISPMSTRMSAFAQREKQQQQQLQLRSFSSRDLGANSPASIVGSPVNGWSKWGSPNGKADWSVNGDELGGKMRRSSSLELKHNGEEPDLSWVQSLVKESPPEMMKEKFASPLPTAPSADGPNSNPQIESIDHSVLGAWLEQMQLDQLVV 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7496g00001 446 SMART c3hfinal6 50 73 IPR000571 GO:0046872
Vium7496g00001 446 SMART c3hfinal6 15 41 IPR000571 GO:0046872
Vium7496g00001 446 FunFam Zinc finger CCCH domain-containing protein 16 78 - -
Vium7496g00001 446 PANTHER UNKEMPT FAMILY MEMBER 1 396 IPR045234 -
Vium7496g00001 446 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 20 40 IPR000571 GO:0046872
Vium7496g00001 446 ProSiteProfiles Zinc finger C3H1-type profile. 20 42 IPR000571 GO:0046872
Vium7496g00001 446 MobiDBLite consensus disorder prediction 397 426 - -
Vium7496g00001 446 Gene3D - 16 78 - -
Vium7496g00001 446 MobiDBLite consensus disorder prediction 117 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7496g00001 Vium-Chr7496 7 1933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7496g00001 1 443 C2H2 Transcription Factor Family AT5G12850 53.813 4.15e-141 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium7496g00001 zf-CCCH 4.1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7496g00001 - - gmx:100784225 768.844