Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium7495g00006 | ATGGTACAAACAAAGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCTTGGGTATCCGAAATTCGCCACCCGCTTCTTAAGAGAAGGGTGTGGCTGGGGACATTTGAAACGGCAGAAGAAGCTGCTCGAGCCTATGATCAAGCTGCTATTCTTATGAGTGGCAGAAATGCTAAAACAAATTTCCCAATAACTCAAACCCCTGAAGGTGATCCAAAGAGCATTACCAGTGAGGACACCCCCTCCTCCACCTCCAAGGATCTGGAGGAAATCCTGCATGCAAAGCTTCGAAAATGTGGTAAGGTGCCTTCACCTTCTATGACCTGCTTGAGGCTTGACACAGAGAACTCCCACATTGGAGTGTGGCAAAAGCGTGCCGGGAGACGTTCGGATTCAAATTGGGTCATGACGGTTCAGCTGGGAAAGAAGAGTACCGACAATGAGACTCATCAAGCCGATAGTAGCACTTCTCTTTCTCTACCTTCTTCCGATCACCACCACCACCACCACCGTGAGTCTCCATCGGGTGTGACAGGTCATCATCATCATGAAGAAGTGGTGAGAGGAGAGATTGATGAAGAAGAGAGAATCGCCCTTCAGATGATAGAGGAACTCCTCAACGACAGAAACTGCCCTAGTCCTTCATTCAGCAACTTTCAAGAAAGGGATGGTGGTGATGATGACACCTTTTTTCTTTAA | 699 | 0.4821 | MVQTKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSITSEDTPSSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGKKSTDNETHQADSSTSLSLPSSDHHHHHHRESPSGVTGHHHHEEVVRGEIDEEERIALQMIEELLNDRNCPSPSFSNFQERDGGDDDTFFL | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium7495g00006 | 232 | MobiDBLite | consensus disorder prediction | 209 | 232 | - | - | |
| Vium7495g00006 | 232 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
| Vium7495g00006 | 232 | MobiDBLite | consensus disorder prediction | 142 | 161 | - | - | |
| Vium7495g00006 | 232 | MobiDBLite | consensus disorder prediction | 61 | 82 | - | - | |
| Vium7495g00006 | 232 | SUPERFAMILY | DNA-binding domain | 6 | 64 | IPR016177 | GO:0003677 | |
| Vium7495g00006 | 232 | Pfam | AP2 domain | 6 | 54 | IPR001471 | GO:0003700|GO:0006355 | |
| Vium7495g00006 | 232 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700|GO:0006355 | |
| Vium7495g00006 | 232 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
| Vium7495g00006 | 232 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
| Vium7495g00006 | 232 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - | |
| Vium7495g00006 | 232 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
| Vium7495g00006 | 232 | MobiDBLite | consensus disorder prediction | 162 | 192 | - | - | |
| Vium7495g00006 | 232 | MobiDBLite | consensus disorder prediction | 61 | 86 | - | - | |
| Vium7495g00006 | 232 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 4 | 161 | - | - | |
| Vium7495g00006 | 232 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
| Vium7495g00006 | 232 | MobiDBLite | consensus disorder prediction | 142 | 192 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium7495g00006 | Vium-Chr7495 | 53328 | 54429 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium7495g00006 | 1 | 207 | AP2-EREBP Transcription Factor Family | AT1G15360 | 61.502 | 1.83e-78 | 233 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | AP2/ERF-ERF | Vium7495g00006 | AP2 | 9.6e-13 | CL0081 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium7495g00006 | - | - | gmx:100814893 | 381.333 |