Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7493g00003 ATGGAACAGAGCCCCAAAAGAAAACACTCTAGCCTCATCCATGAACTTATCCAAGGTAAGGAGCTAGCAAAGCAGCTCGGTAACCTTCTGGTTTCTTCTTCTCCATCGTCCCATGAAGCCAATGAATTGTTGGTTGATAAAATTCTCTCCTCCTATGAGAAAGCACTCACCATGCTGAACTGGGGGTCCATTGTAGGAGAGGCCAAAACCACCGGTGCCACCATGATGGATTCCCATTGTTCTTTTACGAATGGAGGGAGTCCCAAAAGTGAGGTTGTGGACCGTGAATTAGATCACAAAGCTGTCCTCAAGAAAAGAAAGACCATGCCTAGATGGACGGAGCAAGTGAAGATTTGCTCAAGAACAGGACTCGAGGGGTCTTTGGATGATGGATATAGCTGGAGGAAATACGGGCAGAAGGATATTCTTGGAGCCAAGTTTCCAAGAGGATATTACAGATGCACACATAGAAATGTTCAAGGGTGTCTGGCAACTAAACAAGTTCAAAGGTCAGATGAAGACCCGACAACAATTGAGGTGACCTACAGAGGAAGACATACGTGCACGCAAGCTAAGTATTTGAACAAGGCATTCCCATCAAACATAAAGAAGGGTTTGGGGGAAAATCAGTTCCACAATGATGAAACCAATCAACCAATTAAAGAGAAAATACAAGAAACCCCAGTGGGGATTTTCGCCTTTGAAACTGAGCATAGAGTCAAAACCGAGGAATTGGAAATCAAGGAAGATATCTTTCCATGGTTTTCATTTCCTTCTCAATCAAATGGATCAGAAAACGAGGACGTGTTACTCGAGTCTACTTTTGAAAACCATTTCACCGAAAGCTTTTCTCCTGCATTCATATCACCAGCCACTTCAGAATCAAACCCTTTCTGTTTGTCAGCGTGCTACTTGAACAGCACTGAACTGTTATGTCAACAGATTCAAACCTCAGAGTCTGATATCACTGAGACATTTTCGGCCCCAACTTCAGTAACCAACTCCCCAATCCTGGATTTGGACATTTTGCTTCATAAAGGGGATTTTGACACGGATTTCCCTTTCAACAACCCTGACTTTTTCTCTTCATTCGAACTTCCCTGCACTTCCACTTAG 1116 0.4346 MEQSPKRKHSSLIHELIQGKELAKQLGNLLVSSSPSSHEANELLVDKILSSYEKALTMLNWGSIVGEAKTTGATMMDSHCSFTNGGSPKSEVVDRELDHKAVLKKRKTMPRWTEQVKICSRTGLEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTTIEVTYRGRHTCTQAKYLNKAFPSNIKKGLGENQFHNDETNQPIKEKIQETPVGIFAFETEHRVKTEELEIKEDIFPWFSFPSQSNGSENEDVLLESTFENHFTESFSPAFISPATSESNPFCLSACYLNSTELLCQQIQTSESDITETFSAPTSVTNSPILDLDILLHKGDFDTDFPFNNPDFFSSFELPCTST 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7493g00003 371 Gene3D WRKY domain 115 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium7493g00003 371 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium7493g00003 371 FunFam WRKY transcription factor 53 114 191 - -
Vium7493g00003 371 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 10 316 IPR044810 GO:0003700
Vium7493g00003 371 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium7493g00003 371 ProSiteProfiles WRKY domain profile. 123 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium7493g00003 371 SUPERFAMILY WRKY DNA-binding domain 127 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7493g00003 Vium-Chr7493 44899 47139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7493g00003 16 199 WRKY Transcription Factor Family AT5G24110 47.568 4.83e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium7493g00003 WRKY 5.6e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7493g00003 - - gmx:100790050 588.956