Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7489g00001 ATGAGGAGGAGGAGAGAGATGGAAGCCGCACCCAGAGATGGACTTCCCCATAACCGAGGTGGCACAGATGATTTGTACACAGAACTGTGGCGTGCATGTGCGGGGTCTTCCGTTTATGTTCCTCGTGTTGGAGAGAGGGTTTTCTACTTCCCACAAGGTCACTTGGAGCAGGTTGCTGCATTTACTCAGCATCAGCAAGATGGACACATGGAAATTCCTGTGTATGATTTGCCTCCTAAGATCTTATGCAGAGTCGCGTGTGTTCTATTACAGGCCGAAACTTACACTGATGAGGTTTTTGCTCAAGTTACATTAGTTCCGGAGCCCAGGCAAAATCACTTTGGTTTAGAGAACGAAGACAATCATGTTCCTAGCAGAACTACAACCTACTCCTTTGGTAAGGTACTCACTCCGTCAGACACAAGTACACATGGTGGATTCTCTATTCCGAAGAGACATGCTGATGAATGCTTCCGTCCCCTGGACATGACTCATCAAACGCCTTCACATGAAATTGTTGCGAAGGACTTGCACGGGTTCGAGTGGCATTTTCGACACATATACCGTGGTCAGCCGAAACGACACTTGCTAACTAGCGGTTGGAGCACGTTCGTGAATGCAAAGAAACTTGTTGCCGGAGATTCATGCATTTTTGTTAGTGGGGAGTATGGAGAAGTTCGTGTTGGGATTCGTCGGGCAATTAGACATCACAGCAATGCATCCCCCTCTTCATCTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGGCTAGTGCTTCCCATGCTGTCGCCACAGGATCCATGTTCACTGTCTATTACCACCCTTGGACGAACCCCTTTGAGTTTATCATTCCTCTGAAAAACTATTTGAAGTCAACTGTACCCGACTATTCAATTGGAACGAGAGTTCAGATGCAGTGTGATGTTGAAGAGTCTTTAAGAAGATATGCAGGTACGATAATTGGTAATGAAGTTATTGACAGCATTAGGTGGCCTGGTTCTGAATGGAGATGTCTCAAGGTGCAATGGGATGCCATAGTAGATGCCTTCATGCACCCTGAAAGGGTCTGTCCTTGGTGGATTGAGCCCTTGGAATCTGGCATGGAGAAGCACATTCCCGTTCTCCCCAACCCAAAAAAGGCACATGTACTTCACCAGCGCCCTTTGCCTGGATTAAATGTCTTTGCCATGGATGATGCTGCTGCTCAGAGTTCAGCCAGGCCGGTAGCGGATAGGGACTTGCAAGGACAAGATTACAGTGGCCTGAGTACTTCACGGGCATTGCAAAGACCACCATCGACTGATGTAATCCACCCATCGAAGTTCTCAATCCGTGGCTCACAATTCGGGAAGGAGAATCTCAACCAGCTTCCCTTTCTGATGCAAGACATTCTTCATAAATCTCTTGGAAGATCAACGTCATTGCCACATGAAGACTTGTCAATTTCAAGTTCAAATTTAAGCTCCCTTTGTTCTGAATCCTTGGGATGGCCGCCTTCTGAATCTAGAAATGAAAATGATGCTCCACTTGGCCATCTTGGCAGTTGTAGCAAATACAAGCTTTTTGGAGTTAACTTAATTGACCGGCAACCGGAGCTCCCTTCACCACAACTTGCTGGTTTCAGCAAGACTTCAAGTCTGCTTTCTAGTCCTCCAATGTGTGTTACCTCCGGGAAAACATGTAAGAAGTGTCGTTCTGTCAATAATCGTAGCTGCACAAAGGTTCTTAAGCTGGGAACTGCTCTCGGAAGAGCAGTTGATCTAACCCGATTTCGTGGATATGATGAACTCATTGCTGAGCTCGACTCGATGTTTGATTTTGGAGGCAGCTTAGTCAATGGAAGCAGTGGTTGGCATGTGACCTGCATAGATGATGATGGAGACATGATGTTCTTGCGAGATTACCCATGGCAGGATTTCCAGTGTATGGTGCAAAAGATGATCATATGTCAGAAGCATGGTATCAACAATCTCAATCCAAGCTCCTCAGCAGATCCCCCAAGCCTTTAG 2013 0.4645 MRRRREMEAAPRDGLPHNRGGTDDLYTELWRACAGSSVYVPRVGERVFYFPQGHLEQVAAFTQHQQDGHMEIPVYDLPPKILCRVACVLLQAETYTDEVFAQVTLVPEPRQNHFGLENEDNHVPSRTTTYSFGKVLTPSDTSTHGGFSIPKRHADECFRPLDMTHQTPSHEIVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNAKKLVAGDSCIFVSGEYGEVRVGIRRAIRHHSNASPSSSLISGHSMQLGILASASHAVATGSMFTVYYHPWTNPFEFIIPLKNYLKSTVPDYSIGTRVQMQCDVEESLRRYAGTIIGNEVIDSIRWPGSEWRCLKVQWDAIVDAFMHPERVCPWWIEPLESGMEKHIPVLPNPKKAHVLHQRPLPGLNVFAMDDAAAQSSARPVADRDLQGQDYSGLSTSRALQRPPSTDVIHPSKFSIRGSQFGKENLNQLPFLMQDILHKSLGRSTSLPHEDLSISSSNLSSLCSESLGWPPSESRNENDAPLGHLGSCSKYKLFGVNLIDRQPELPSPQLAGFSKTSSLLSSPPMCVTSGKTCKKCRSVNNRSCTKVLKLGTALGRAVDLTRFRGYDELIAELDSMFDFGGSLVNGSSGWHVTCIDDDGDMMFLRDYPWQDFQCMVQKMIICQKHGINNLNPSSSADPPSL 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7489g00001 670 Gene3D - 567 660 - -
Vium7489g00001 670 Gene3D - 130 234 IPR015300 -
Vium7489g00001 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 657 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium7489g00001 670 SMART B3_2 132 234 IPR003340 GO:0003677
Vium7489g00001 670 FunFam Auxin response factor 297 368 - -
Vium7489g00001 670 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Vium7489g00001 670 FunFam Auxin response factor 130 234 - -
Vium7489g00001 670 SUPERFAMILY CAD & PB1 domains 574 647 - -
Vium7489g00001 670 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Vium7489g00001 670 MobiDBLite consensus disorder prediction 1 19 - -
Vium7489g00001 670 MobiDBLite consensus disorder prediction 407 440 - -
Vium7489g00001 670 MobiDBLite consensus disorder prediction 1 21 - -
Vium7489g00001 670 SUPERFAMILY DNA-binding pseudobarrel domain 123 262 IPR015300 -
Vium7489g00001 670 Pfam Auxin response factor 260 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium7489g00001 670 CDD B3_DNA 131 232 IPR003340 GO:0003677
Vium7489g00001 670 Gene3D - 297 370 - -
Vium7489g00001 670 ProSiteProfiles PB1 domain profile. 571 654 IPR000270 GO:0005515
Vium7489g00001 670 MobiDBLite consensus disorder prediction 418 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7489g00001 Vium-Chr7489 7219 15915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7489g00001 18 661 B3 DNA Binding Superfamily AT4G23980 39.376 5.03e-135 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium7489g00001 B3 3e-23 CL0405