Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7488g00003 ATGGGGGAGGTGGTCATGAGTGGAGAGAAGTCAGTCAGAGTGGAGAAGGAAGAGAGTGGGAGTGGGAGCAAGGGTGAATTGAAGGGCTTGATGAGGTGGGAGAAGTTTCTTCCCAGGATGATTTTGAGGGTGTTATTGGTTGAAGCCGATGACTCCACAAGACAGATTATTGCTGCGCTTCTCAGAAAATGCAGCTACAAAGTTGCTGCTGTTCCTGATGGGTTGAAGGCGTGGGAATTACTCAAGGGAAGACCGGGCAATATTGATCTAATACTGACGGAGGTGGATTTGCCATCCATATCTGGCTATGCACTTCTTACCTTAATTATGGAGCATGATATTTGCAAAAACATCCCTGTCATAATGATGTCTTCCCAAGAATCAATTAGCACGGTATACAAATGCATGCTGAGGGGTGCTGCCGATTATCTTGTTAAGCCAATAAGAAAAAATGAACTGAGAAATCTGTGGCAACATGTTTGGAGAAGACAATCATCAGCCACTGGCATAAATGGTCCCCAAGATGAGAGTGTTGCACAGCAGAAGGTCGAAGCCACTGCTGAAAATAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGCGAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCATGTACTAAGCCTGACTTGGAAGCTGAGAGTGGGCCTGTTGATAACATGCAGGAATTTTCTCCACTGAAATGTGGGGAAGAATATCCAAGTGGAGCAGAGACACAAGAGGTTGAAACATGCATTCGTTTAGGACAGACATTGATGATGAATGACAGTCATGCTGGAGGATTAACTATGCACAGAACTGGTGAAGCAAGCACAACTAATGACAAGGATGCTGATCTGGAGCATTTGGGGAATGCTAGCATCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATTAACTCATCTAAGGAAGCTATTGACTTGATTGGAGCATTTCATACTCATCCCAACTGGACGGTAAAAAGTCCCACAGTTGATTGCACAGGCAAGGTTGACCTTTCTCCTCAATTAGATCTTTCTCTGAGAAGATCTCGTCCCAGCAGCTTTGAGAATGAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCCTTCAAACGGTATACTAACAGGCAATTGCAAGTATTGATGCCTGCAGCATTAGTTAACTTCACTGACCAACAAAGAGATCAGAATGCAAATGGTGACAAAAACATCTCACACATTGTTACTGGCTGCAACTCCGATAGTTCAGCACCAGGTATGCAAAGATGTATCGTGTCTCCAACTACAGTCCAATCAAAAGAGTCTGAAATTGCAACCTCACACTCTCAGCAAGGGCATTCTCTCCCAATTCCAGTTAAGGGTGTAAGGTTCAATGATCTATGCACAGCCTATCGTTCTGTACTTCCTTCAATGTTTCGTACACAATCAGGTCCACCAGTAATGCCAAGTCCAAGTTCAGTTGTGCTCCTTGAACCAAACTTTCAGAATGCATTTTATCAGTCAAACATTAAAGAGAGTAGTACAGAGCAGCTTTATCAACCTCTTGGTCCAAATGGGAACAGTTCCCAGAATCACATCGTGTACACACAGGAACACAAATCAGAACATGCGGAGGATCGCGGGCATATCTCTCCTACAACTGATCAAAGTGTGTCAAGTAGTTTCTGTAATGGAAACGCAAGCCATTTTAATAGCATCGGTTATGGAAGCAACTGTGGAAGTAGCAGCAATGCCGATCAAGTTACCACTGTCAGGGTAGCTTCAGAGAACAAGAATGAGGACCTCACAAACAATGCAAACACTCATCGATCCATCCAAAGAGAAGCAGCACTAAACAAATTCCGGTTGAAAAGAAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCAAGAGTGAAAGGACAGTTTGTTCGTCAAGTTCATCCTGATTCTCTTGTTGCAGAACAAGATGGTAAAGAATATGATCATTCACGGATTTCTGACTCACTGGAGAGGAGAGCATATGCATAG 2079 0.4353 MGEVVMSGEKSVRVEKEESGSGSKGELKGLMRWEKFLPRMILRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWELLKGRPGNIDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQESISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSATGINGPQDESVAQQKVEATAENNAASNRSSGDAACIQRNMELIEKGSDAQSSCTKPDLEAESGPVDNMQEFSPLKCGEEYPSGAETQEVETCIRLGQTLMMNDSHAGGLTMHRTGEASTTNDKDADLEHLGNASISGEAHDNHYVQINSSKEAIDLIGAFHTHPNWTVKSPTVDCTGKVDLSPQLDLSLRRSRPSSFENELTEERHTLMHSNASAFKRYTNRQLQVLMPAALVNFTDQQRDQNANGDKNISHIVTGCNSDSSAPGMQRCIVSPTTVQSKESEIATSHSQQGHSLPIPVKGVRFNDLCTAYRSVLPSMFRTQSGPPVMPSPSSVVLLEPNFQNAFYQSNIKESSTEQLYQPLGPNGNSSQNHIVYTQEHKSEHAEDRGHISPTTDQSVSSSFCNGNASHFNSIGYGSNCGSSSNADQVTTVRVASENKNEDLTNNANTHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDSLVAEQDGKEYDHSRISDSLERRAYA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7488g00003 692 ProSiteProfiles CCT domain profile. 620 662 IPR010402 GO:0005515
Vium7488g00003 692 ProSiteProfiles Response regulatory domain profile. 43 161 IPR001789 GO:0000160
Vium7488g00003 692 MobiDBLite consensus disorder prediction 9 25 - -
Vium7488g00003 692 MobiDBLite consensus disorder prediction 544 566 - -
Vium7488g00003 692 Pfam CCT motif 620 662 IPR010402 GO:0005515
Vium7488g00003 692 SMART REC_2 42 157 IPR001789 GO:0000160
Vium7488g00003 692 Gene3D - 40 270 - -
Vium7488g00003 692 Pfam Response regulator receiver domain 44 155 IPR001789 GO:0000160
Vium7488g00003 692 MobiDBLite consensus disorder prediction 646 692 - -
Vium7488g00003 692 PANTHER TWO-COMPONENT RESPONSE REGULATOR 43 227 IPR045279 GO:0009736
Vium7488g00003 692 MobiDBLite consensus disorder prediction 214 234 - -
Vium7488g00003 692 MobiDBLite consensus disorder prediction 668 692 - -
Vium7488g00003 692 CDD psREC_PRR 44 147 - -
Vium7488g00003 692 SUPERFAMILY CheY-like 42 166 IPR011006 -
Vium7488g00003 692 MobiDBLite consensus disorder prediction 1 25 - -
Vium7488g00003 692 MobiDBLite consensus disorder prediction 167 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7488g00003 Vium-Chr7488 42685 47489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7488g00003 319 481 Response Regulator Gene Family AT5G24470 30.994 3.15e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vium7488g00003 Response_reg 3.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7488g00003 K12130 - gmx:100777119 1120.53