Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7486g00001 ATGGAAGTTGACCTGAGAACCATGGTTTTCAACGTTCTTCTACTCATGTTGTGGTCATTGCAGACTTGCTTCGCCATGATCAGTGACGCAGGTAGCATTGAATTCGACGGAGGATCGGAAGAAAGTGATCATGAGACATTGTTTGATCAATCATTTTGGTACAGTTTTAGCATTGGTTATGTCTGTTCAGCCAGTGGGATCATCTTTGCTTATATGTGGTTCTGTGTCCCTTGGGCGCAACTGAAGAAGACCAAGAGAAAGTTCATGTCTTCCAACGTTGGTAGGCATGATATACTACTCTATCTGTTGTTGCTCAAGAAAGGAAACCAAGAGGTTTCTAGAGTACTGGAGAAACTAAGATCGAGTATCAGCTTCATGGAACTGTGTAAAGCAACTGATTACTTCAACATGACCAATGTTATTGGGACAGGAAAGACAGGGACTGTGTACAAGGCCAAGCTTTCTAATGGCTCAAAAGTGGCAGTGAAGAGACTCTATGATTCCATGTTATTTGAAATAAAGTTTGCCTTAGAAATCGTGATTCTACACAGATTCAAACATGGAAACTTAGTGGGTCTTCTTGGGTTTTGCACAGAGAGAAAGCATAGGATCCTTGTTTATGAATTCATGCCAAATGGTAAACTCTCTGATTGGTTACATCCTTTGCAAAATGAAGCTTTTCCATTGGATTGGCCAATAAGGCTTAAAATAGCACTTGGGTTGGCTAGAGGTTTATCCTTTCTCCATTATTGTTGCAATTGGAAGATACTCCATTTTGGTATAAGCTCGGAGCATGTTTTGCTTGATAAGAATTTTGAGCCCAAATTACGGAATTTCAGAAGTGCTGAACTCATGAAAGAAAGCCAGAAGAAGCTAGGGAAGAAGGATGTGTACGATTTTGGCGTTGTACTGATGGAGCTTATCACTGGAAAGAAGCACGTTGAAATGAGTATATATTTTAATGTCATTGATTCATCTTTATTGGGAAAAGGATTCGATGAGCAAATCTCTTGTCTGGTTAAGGTTGCAGTTGATTGCATTCAGTTGTCTCCACACCAGAGGCCAAGTATGCTTGACGTGTATAAATATATAGAAAGGTTATGGGAAGGATACGAAACTGATGACTGA 1128 0.3998 MEVDLRTMVFNVLLLMLWSLQTCFAMISDAGSIEFDGGSEESDHETLFDQSFWYSFSIGYVCSASGIIFAYMWFCVPWAQLKKTKRKFMSSNVGRHDILLYLLLLKKGNQEVSRVLEKLRSSISFMELCKATDYFNMTNVIGTGKTGTVYKAKLSNGSKVAVKRLYDSMLFEIKFALEIVILHRFKHGNLVGLLGFCTERKHRILVYEFMPNGKLSDWLHPLQNEAFPLDWPIRLKIALGLARGLSFLHYCCNWKILHFGISSEHVLLDKNFEPKLRNFRSAELMKESQKKLGKKDVYDFGVVLMELITGKKHVEMSIYFNVIDSSLLGKGFDEQISCLVKVAVDCIQLSPHQRPSMLDVYKYIERLWEGYETDD 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7486g00001 375 ProSitePatterns Protein kinases ATP-binding region signature. 141 163 IPR017441 GO:0005524
Vium7486g00001 375 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 78 366 - -
Vium7486g00001 375 ProSiteProfiles Protein kinase domain profile. 135 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7486g00001 375 Pfam Protein kinase domain 137 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7486g00001 375 Gene3D Phosphorylase Kinase; domain 1 102 209 - -
Vium7486g00001 375 SUPERFAMILY Protein kinase-like (PK-like) 115 364 IPR011009 -
Vium7486g00001 375 Gene3D Transferase(Phosphotransferase) domain 1 294 374 - -
Vium7486g00001 375 Gene3D Transferase(Phosphotransferase) domain 1 210 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7486g00001 Vium-Chr7486 2750 4163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7486g00001 67 375 Receptor kinase-like Gene Family AT4G33430 30.641 7.98e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium7486g00001 Pkinase 1.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7486g00001 - - vum:124845269 761.525