Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7485g00005 ATGAGTTCCTCCAAAACCAAAAAGAAGCAAACCACAACAACACAAGAACATCAACAACATGATACGGTTTGGGGAGGGAGGTACCTTGGTGTGAGGAGGAGGCCGTGGGGAAGGTATGCGGCGGAAATTCGGGACCCTTCCACCAAGGAAAGACATTGGTTGGGTACATTTGACACCGCAGAAGAGGCTGCTCTGGCTTACGACAGAGCGGCCCGCTCCATGCGTGGACCACGTGCCCGAACCAATTTCGTCTACCCGGATACTCCACCGGGTTCTTCCGTCACCACCATCCTCTCCCCTGATGAACAAACCCAAACCCAAATCCAAATCCATCAGGTGCAAGAAGACCTCTCGTCTTTACTCAACCCGAACCTCTTTTCACAACCTGACCCAAACCCGCAATTTTCCTTGGGCGGGTACTCGGGTGTAACGACCACTCCCACATTTTCTACCACCGAAGTTGTTTCGTCCGGTGGCTATAGCTATAGTCATGGTTACACCGAAGGAGGAAGCAACGTGGAGGATTCACATTCACATTCTCATTCTCATTCTCATTCTCATTTTAATCTCTTTGATGATGGTGAAACGCAGCTTCCACCGTTGCCACCGGATATCACAAGCTCCATTGCCTATGAAACGGGGCATGGGTTTTACGGAGACGGTGTCGGGTTTTCTGACCCGAGTTTTAGTTTGACTGATACCGGATCGTGTTACCCGTTTTCTGGGTTCGAATCCGGTGATTACGTGGTGCACAGTCCACTTTTCAGTGCAATGCCACCGGTGTCCGATAACGTGGCAATGGGTCACGAGGGTTTTGATCTGGGAAGCTCTTCTTATTTCTTCCGAAATTAG 852 0.5035 MSSSKTKKKQTTTTQEHQQHDTVWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYPDTPPGSSVTTILSPDEQTQTQIQIHQVQEDLSSLLNPNLFSQPDPNPQFSLGGYSGVTTTPTFSTTEVVSSGGYSYSHGYTEGGSNVEDSHSHSHSHSHSHFNLFDDGETQLPPLPPDITSSIAYETGHGFYGDGVGFSDPSFSLTDTGSCYPFSGFESGDYVVHSPLFSAMPPVSDNVAMGHEGFDLGSSSYFFRN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7485g00005 283 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 150 - -
Vium7485g00005 283 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Vium7485g00005 283 MobiDBLite consensus disorder prediction 174 190 - -
Vium7485g00005 283 FunFam Ethylene-responsive transcription factor 2 27 85 - -
Vium7485g00005 283 CDD AP2 27 83 IPR001471 GO:0003700|GO:0006355
Vium7485g00005 283 SUPERFAMILY DNA-binding domain 27 84 IPR016177 GO:0003677
Vium7485g00005 283 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Vium7485g00005 283 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Vium7485g00005 283 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Vium7485g00005 283 Pfam AP2 domain 28 76 IPR001471 GO:0003700|GO:0006355
Vium7485g00005 283 MobiDBLite consensus disorder prediction 166 206 - -
Vium7485g00005 283 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Vium7485g00005 283 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7485g00005 Vium-Chr7485 40583 41882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7485g00005 11 272 AP2-EREBP Transcription Factor Family AT5G13910 41.985 7.28e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium7485g00005 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7485g00005 K09286 - gmx:100815668 405.986