Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7485g00001 TCCGTGGTTTGTCCCGACTGCGACTGCGGATTCATCGAACAAATCGAACACCCGCCGCGCTCAGTCCACCTCGACCCTCACCGTCGTCACTTCCCTGCTGCCGCCATGTACATGATCGGCCAGCGCCGTGCCTCCGACAATGCTGTCCGTCCCTTCCTGCGCCGCACCCGCCACAACGGTGGTGACCGCTCCCCCTTCAACCCCGTTATCGTCCTCCGCGGCAGCGCAGCTGCCACCTCCGCTACCAGCGAGGAGGAAAGTCAAGGCTTTGAGCTCTTCTACGACGATGGTGCCGGTTCTGGCTTGAGACCCTTGCCTCCGAGCATGTCAGAGTTTCTACTCGGTGGATTCGATAGGCTTCTGGAGCAACTGTCTCAGATTGAGATCAACGGTATTGGAAGGTATGAGCACCCTCCTGCGTCAAAAGCAGCCATAGATTCCTTACCAACCATCGAAATTGATAACACTCACTTAGCCATGGAATCACACTGTGCGGTGTGCAAAGAAGCTTTTGAATTAGGTACTGCGATGAGGGAAATGTCGTGTAAGCATATATATCACCCTGAATGCATCTTACCATGGCTAGCTTCGAAGGTTTTCAATTTGGGGTGA 612 0.5458 SVVCPDCDCGFIEQIEHPPRSVHLDPHRRHFPAAAMYMIGQRRASDNAVRPFLRRTRHNGGDRSPFNPVIVLRGSAAATSATSEEESQGFELFYDDGAGSGLRPLPPSMSEFLLGXGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDNTHLAMESHCAVCKEAFELGTAMREMSCKHIYHPECILPWLASKVFNLG 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7485g00001 204 SUPERFAMILY RING/U-box 145 199 - -
Vium7485g00001 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 200 IPR013083 -
Vium7485g00001 204 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 77 197 - -
Vium7485g00001 204 Pfam Ring finger domain 164 198 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7485g00001 Vium-Chr7485 4248 4861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7485g00001 104 199 C3H Transcription Factor Family AT5G01980 36.458 9.50e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7485g00001 K11982 - gmx:100807324 347.051