Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7483g00006 ATGGAGAACCAGCAGAAGCAAAATTGGTTCGAAAAGGCAAAGCCATTCGCAGCAGTGGTATCAATTCAGTTTGGATACGCAATCATGGATGTTATATCCAAAGCTGCACTCAACAAAGGGATGAGCAATTATGTGTTCGTCGTTTATCGCCAAGCAGTTGCATTCCTTGTCATGGCTCCTTTGGCATGGTTTTTTGAGAGCAGGAAAGCAAAGCCAAAGATGACTCTCTCAATTTTCATCAAGATTTTGGTGCTGAGCTTGATAGAGCCAGTTATTGACCAGAATCTGTATTTTTTGGGGATGAAGTACACAACAGCAACCTTTGCCGTTACCATCACCAATATGCTTCCTGCTATCACCTTTATCTTCGCTTGGATTCTTAGGCTTGAGCAAGTTAATATAAGAAGTATACGAAGCCAAGCGAAGGTGGTGGGAACTGTAGCAACTGTTTCGGGTGCCATGATCATGACACTGATTAAAGGGCCAGTGCTTTTTGGGTCACACGGAGGCAATGATCAAAGCCAGTATAATGGCACAAGTACTCAACATACAATCATAGGGTTCATATTGATGACTATTGGATGCTTTTGCTGGGCTTTTTTCGTGATCTTGCAGGCTATTACTCTGAAAACCTACCCTGCTGCACTCTCTCTTTCTGCTTGGATATGCTTAACGGCCACAGTTGAAGGTGCTGCAGTGGCTTTGGTCATGGAAAGGGGCAACCCTTCAGTTTGGTCTATAAAATTTGATATGAGATTGCTCTGTGCTGTTTATTCTGGCATAACATGTTCGGGATTGGCTTATTACTTGCAAGGAGTGGTGATGAAAAGTAAAGGCCCAGTGTTCGTGACAGCATTTAATCCTCTGGGAATGGTAATCGTGGCTATCATGGGCTACTTCCTTCTGGCTGAGCAAGTTTTCCTTGGAAGAATGACTGGTGCCGTAATCATTTGTTTGGGCCTATACTTTGTGGTGTGGGGAAAAAGCAAAGACAATTATGGCCCAGAAGACCCAAATACTCAAGAGCCCATAGAGGAGATGGAAAGTGCTAAGAAGGAAAATTTCACTTGCTGCACTCATGGAGTCACCACTGCTACCAATTTAGGAAATGGAAACACAACTCCAAGTGAAGAACAAGTGTGA 1143 0.4348 MENQQKQNWFEKAKPFAAVVSIQFGYAIMDVISKAALNKGMSNYVFVVYRQAVAFLVMAPLAWFFESRKAKPKMTLSIFIKILVLSLIEPVIDQNLYFLGMKYTTATFAVTITNMLPAITFIFAWILRLEQVNIRSIRSQAKVVGTVATVSGAMIMTLIKGPVLFGSHGGNDQSQYNGTSTQHTIIGFILMTIGCFCWAFFVILQAITLKTYPAALSLSAWICLTATVEGAAVALVMERGNPSVWSIKFDMRLLCAVYSGITCSGLAYYLQGVVMKSKGPVFVTAFNPLGMVIVAIMGYFLLAEQVFLGRMTGAVIICLGLYFVVWGKSKDNYGPEDPNTQEPIEEMESAKKENFTCCTHGVTTATNLGNGNTTPSEEQV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7483g00006 380 PANTHER WAT1-RELATED PROTEIN 14 339 IPR030184 GO:0016020|GO:0022857
Vium7483g00006 380 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 330 - -
Vium7483g00006 380 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020
Vium7483g00006 380 Pfam EamA-like transporter family 23 137 IPR000620 GO:0016020
Vium7483g00006 380 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7483g00006 Vium-Chr7483 16265 19239 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7483g00006 1 377 Nodulin-like Gene Family AT2G37460 58.225 3.23e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7483g00006 - - gmx:100813408 578.941