Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7483g00005 ATGTCGTTCCACAATCAAGCATTTTGGATGGGAAAGGGTCCTGAATGTTTGAATGATGGTGACATGGCAAATGACAATTCTTCTAGAATTGATTCCAAGCGTGCTTGTTCATGGTTCATGGATGACCCTGATGTGGATCTGCTTCCCAATAAGAAACAAGCAGTAGAAGCTCCAAACAATTTGTTATCTGGAATTCTCAACTCGAATGTTCCTTCCTGGGGAAATTCCTCAGGATTTCACTCCTTAAATGGCCATTTTGCCGAACAAGTATTTGCCCCAGATGCTGTAAATATGCCTTTTGAAGATGCAAATACTCCCTCTGTTAGCATAGATGACAAGCTGAGTGTGGAAAGAAAGGATAATATGGACCCCTTTGGGAGTGGATCCTCGTTTGGTTTATCCATATCAACTGCATTAGAAGATCCTCGTTTAGTTTTTAACTATGATGGAATTAGAAAAGTCAGAGTAAACGAGGTGAAGGGATCCGAGAATGTCATGTCTGTTACTGCAAACAGTCCCTATGATAGAGGAGTCAGTGACCCTTTGTCAAATCCTTGTCTATACAAGGCTGGTGATAATTCCATATCAACAAATCTCAACTATAACAAAGGGGGAGCCAATATGATAGCAATGGATGGTTCCTATGACAGGACTGATAACAATTTCATGTCAATGGGTCAATCCTATGACAAGGGAAATGACAGCTTATCTGTACATCCAACATTCAATGATATTTGTAATACGATATCAATGGATGATAGAAATCTAATATCTATTGCTCAAGCTTACAATAAGGGTCATGGCAATTCTATGTTAACCAACCAGCTATACAATAAGGTCGACAATGGCACTATGTCATCTCATTACAACTACCACAAGGAGGGTAATGATGTGCCATTCGTTCCACGATCCTATGATAAAGGAGAGAGCACTATCATATGTTTCGGTAACCGTGAGGATGACACTACTTCCTCAGATTTGTTTATTTCTGACTATGAACTGTTGATGTGTCAAGCTCTTTCACACAAGTCAGAAGCTGTGAAAGAGAAAGAGTTGGTTGCATCTAGTTCTAATTTACTTTCAAGTACAACACAGACATCTGCACCTGCAACTGAAAATATTCTCAGGACAAAAGAGGAGATAAAAGTGTCTAAGAGGGCTATTTCAAACAACTTCCCTTCAAATGTGAGAAGTTTGCTATCCACTGGTATGCTGGATGGTCTCTCAGTAAAGTATAAGGCGTGGTCACGGGAGAAGGAACTTCGAGGTGTTATAAAAGGTGCTGGGTATCTGTGCAGTTGTCACTCATGTAATTTTTCCAAGGTTATTAATGCATATGAATTTGAGCGACATGCTGGTTGCAAGACAAAACACCCCAATAATCACATTTACTTTGATAATGGGAAAACTATTTATGGGGTTGTACAAGAGCTTAGGAGCACTCCAAAGAGCATGCTGTTTGAAGTTATTCAGACTGTAACTGGCTCACCTATCAATCAGAAATCCTTCTGCATTTGGAAAGAATCTTTTTTGGCTCAAGCAGCAGGGAACTCCAGCACATATGTGCAAAGCAAGTAA 1578 0.3986 MSFHNQAFWMGKGPECLNDGDMANDNSSRIDSKRACSWFMDDPDVDLLPNKKQAVEAPNNLLSGILNSNVPSWGNSSGFHSLNGHFAEQVFAPDAVNMPFEDANTPSVSIDDKLSVERKDNMDPFGSGSSFGLSISTALEDPRLVFNYDGIRKVRVNEVKGSENVMSVTANSPYDRGVSDPLSNPCLYKAGDNSISTNLNYNKGGANMIAMDGSYDRTDNNFMSMGQSYDKGNDSLSVHPTFNDICNTISMDDRNLISIAQAYNKGHGNSMLTNQLYNKVDNGTMSSHYNYHKEGNDVPFVPRSYDKGESTIICFGNREDDTTSSDLFISDYELLMCQALSHKSEAVKEKELVASSSNLLSSTTQTSAPATENILRTKEEIKVSKRAISNNFPSNVRSLLSTGMLDGLSVKYKAWSREKELRGVIKGAGYLCSCHSCNFSKVINAYEFERHAGCKTKHPNNHIYFDNGKTIYGVVQELRSTPKSMLFEVIQTVTGSPINQKSFCIWKESFLAQAAGNSSTYVQSK 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7483g00005 525 PANTHER AUTOIMMUNE REGULATOR 8 477 - -
Vium7483g00005 525 Pfam Tify domain binding domain 423 478 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7483g00005 Vium-Chr7483 12785 16298 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7483g00005 373 510 PHD Transcription Factor Family AT3G53680 53.623 2.01e-42 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7483g00005 - - gmx:100794765 811.216