Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7483g00001 ATGTCGTTCCACAATCAAGCATTTTGGATGGGAAAGGGTCCTGAATGTTTGAATGATGGTGACATGGCAAATGACAATTCTTCTAGAATTGATTCCAAGCGTGCTTGTTCATGGTTCATGGATGACCCTGATGTGGATCTGCTTCCCAATAAGAAACAAGCAGTAGAAGCTCCAAACAATTTGTTATCTGGAATTCTCAACTCGAATGTTCCTTCCTGGGGAAATTCCTCAGGATTTCACTCCTTAAATGGCCATTTTGCCGAACAAGTATTTGCCCCAGATGCTGTAAATATGCCTTTTGAAGATGCAAATACTCCCTCTGTTAGCATAGATGACAAGCTGAGTGTGGAAAGAAAGGATAATATGGACCCCTTTGGGAGTGGATCCTCGTTTGGTTTATCCATATCAACTGCATTAGAAGATCCTCGTTTAGTTTTTAACTATGATGGAATTAGAAAAGTCAGAGTAAACGAGGTGAAGGGATCCGAGAATGTCATGTCTGTTACTGCAAACAGTCCCTATGATAGAGGAGTCAGTGACCCTTTGTCAAATCCTTGTCTATACAAGGCTGGTGATAATTCCATATCAACAAATCTCAACTATAACAAAGGGGGAGCCAATATGATAGCAATGGATGGTTCCTATGACAGGACTGATAACAATTTCATGTCAATGGGTCAATCCTATGACAAGGGAAATGACAGCTTATCTGTACATCCAACATTCAATGATATTTGTAATACGATATCAATGGATGATAGAAATCTAATATCTATTGCTCAAGCTTACAATAAGGGTCATGGCAATTCTATGTTAACCAACCAGCTATACAATAAGGTCGACAATGGCACTATGTCATCTCATTACAACTACCACAAGGAGGGTAATGATGTGCCATTCGTTCCACGATCCTATGATAAAGGAGAGAGCACTATCATATGTTTCGGTAACCGTGAGGATGACACTACTTCCTCAGATTTGTTTATTTCTGACTATGAACTGTTGATGTGTCAAGCTCTTTCACACAAGTCAGAAGCTGTGAAAGAGAAAGAGTTGGTTGCATCTAGTTCTAATTTACTTTCAAGTACAACACAGACATCTGCACCTGCAACTGAAAATATTCTCAGGACAAAAGAGGAGATAAAAGTGTCTAAGAGGGCTATTTCAAACAACTTCCCTTCAAATGTGAGAAGTTTGCTATCCACTGGTATGCTGGATGGTCTCTCAGTAAAGTATAAGGCGTGGTCACGGGAGGAACTTCGAGGTGTTATAAAAGGTGCTGGGTATCTGTGCAGTTGTCACTCATGTAATTTTTCCAAGGTTATTAATGCATATGAATTTGAGCGACATGCTGGTTGCAAGACAAAACACCCCAATAATCACATTTACTTTGATAATGGGAAAACTATTTATGGGGTTGTACAAGAGCTTAGGAGCACTCCAAAGAGCATGCTGTTTGAAGTTATTCAGACTGTAACTGGCTCACCTATCAATCAGAAATCCTTCTGCATTTGGAAAGAATCTTTTTTGGCTCAAGCAGCAGGGAACTCCAGCACATATGTGCAAAGCAAGTAA 1575 0.3987 MSFHNQAFWMGKGPECLNDGDMANDNSSRIDSKRACSWFMDDPDVDLLPNKKQAVEAPNNLLSGILNSNVPSWGNSSGFHSLNGHFAEQVFAPDAVNMPFEDANTPSVSIDDKLSVERKDNMDPFGSGSSFGLSISTALEDPRLVFNYDGIRKVRVNEVKGSENVMSVTANSPYDRGVSDPLSNPCLYKAGDNSISTNLNYNKGGANMIAMDGSYDRTDNNFMSMGQSYDKGNDSLSVHPTFNDICNTISMDDRNLISIAQAYNKGHGNSMLTNQLYNKVDNGTMSSHYNYHKEGNDVPFVPRSYDKGESTIICFGNREDDTTSSDLFISDYELLMCQALSHKSEAVKEKELVASSSNLLSSTTQTSAPATENILRTKEEIKVSKRAISNNFPSNVRSLLSTGMLDGLSVKYKAWSREELRGVIKGAGYLCSCHSCNFSKVINAYEFERHAGCKTKHPNNHIYFDNGKTIYGVVQELRSTPKSMLFEVIQTVTGSPINQKSFCIWKESFLAQAAGNSSTYVQSK 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7483g00001 524 PANTHER AUTOIMMUNE REGULATOR 8 476 - -
Vium7483g00001 524 Pfam Tify domain binding domain 422 477 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7483g00001 Vium-Chr7483 7414 10928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7483g00001 373 509 PHD Transcription Factor Family AT3G53680 53.623 1.14e-40 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7483g00001 - - gmx:100794765 804.668