Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium747g00002 ATGGTGAGGTCTCCCTGTGAAAAAGTCAATGTCAAAAGGGGTGTGTGGGCCACAGAAGAAGACACAAAGAAGCTTGCATTTGGTTCCAAGCATGGATCTGGGCTCAAGAGGTGTGGAAAGAGTTGTAGGCTTAGATGGAGTAACTGCCTTAGGAATGATCTTAAGCACGACAATTTCACAACCCAAGAAGAAGATCTAATCATTAAGCTTCACGCAGCCATAGGTAGCAGGTGGTCTATAATAGCCCAACAGCTTCCTGGGAGAACAGACAATGATGTAAAGATCTACTGGAACACAAAGCTGAAAAAGAAACTCTCTGAAATGGGGATTGATCCTGTTACCCACAAGCCCTTTTCTAAACTCATTGCTGACTATGGAAACATCGGGGGTTGCCAGAAACCAAGTACCAGAATAGGGTCTATCAATAAAGACTTCAAGAGCGCAATGATGCTAAAATCAGAACCCCATCAAACCATGCCACAAGGATCTACAAATATAAATGACCAAGAAACCACTAGAAACAACTTTTTATTCAACAGAGCTCATGGTGATAATCTCTCAATGGACTTTGAGAATGAGATGATCTCAGGATCTGTGTTAGGGGAAGATCGTTTGTCAAAAACTTCATCCCCTTCTACTCCTTCTACTTGTTCCACTTCAGCTTTTAGTTGGAATGACTTCCTTCTTCTAGAAGATGATTTTACACCACTTGACTACCAGGAAACAGACACCCTGGTTTCAAAGGAGAATGTGGTGACCATACAGAGTTGGAATAGCAAAGAGGTGAAGTCACATCATGCCTCGGGTAGTAGTGACTTCCAATTTTCATCATCCTCTCACACTTCATTCATAGAAGCCATGCTTGATCAAGAAAATGAAATGTTTCTGAGTTTTCCACACCTTATGGAGGAACCATCCAACTTGAGTTAA 930 0.4183 MVRSPCEKVNVKRGVWATEEDTKKLAFGSKHGSGLKRCGKSCRLRWSNCLRNDLKHDNFTTQEEDLIIKLHAAIGSRWSIIAQQLPGRTDNDVKIYWNTKLKKKLSEMGIDPVTHKPFSKLIADYGNIGGCQKPSTRIGSINKDFKSAMMLKSEPHQTMPQGSTNINDQETTRNNFLFNRAHGDNLSMDFENEMISGSVLGEDRLSKTSSPSTPSTCSTSAFSWNDFLLLEDDFTPLDYQETDTLVSKENVVTIQSWNSKEVKSHHASGSSDFQFSSSSHTSFIEAMLDQENEMFLSFPHLMEEPSNLS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium747g00002 309 Pfam Myb-like DNA-binding domain 58 99 IPR001005 -
Vium747g00002 309 SUPERFAMILY Homeodomain-like 36 108 IPR009057 -
Vium747g00002 309 PANTHER F14D16.11-RELATED 1 306 - -
Vium747g00002 309 FunFam Os07g0634900 protein 58 117 - -
Vium747g00002 309 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vium747g00002 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Vium747g00002 309 SMART sant 12 52 IPR001005 -
Vium747g00002 309 SMART sant 55 103 IPR001005 -
Vium747g00002 309 CDD SANT 58 101 IPR001005 -
Vium747g00002 309 Gene3D - 57 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium747g00002 Vium-Chr747 11427 12834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium747g00002 1 304 MYB Transcription Factor Family AT3G28470 39.506 1.49e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium747g00002 Myb_DNA-binding 3.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium747g00002 K09422 - gmx:100795381 437.958