Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium747g00001 ATGGTGAGGTCTCCCTGTGAAAAAGTCAATGTCAAAAGGGGTGTGTGGGCCACAGAAGAAGACACAAAGAAGCTTGCATTTGGTTCCAAGCATGGATCTGGTAACTGGACTTCTGTCCCCAGGAAAACAAGGCTCAAGAGGTGTGGAAAGAGTTGTAGGCTTAGATGGAGTAACTGCCTTAGGAATGATCTTAAGCACGACAATTTCACAACCCAAGAAGAAGATCTAATCATTAAGCTTCACGCAGCCATAGGTAGCAGGTGGTCTATAATAGCCCAACAGCTTCCTGGGAGAACAGACAATGATGTAAAGATCTACTGGAACACAAAGCTGAAAAAGAAACTCTCTGAAATGGGGATTGATCCTGTTACCCACAAGCCCTTTTCTAAACTCATTGCTGACTATGGAAACATCGGGGGTTGCCAGAAACCAAGTACCAGAATAGGGTCTATCAATAAAGACTTCAAGAGCGCAATGATGCTAAAATCAGAACCCCATCAAACCATGCCACAAGGATCTACAAATATAAATGACCAAGAAACCACTAGAAACAACTTTTTATTCAACAGAGCTCATGGTGATAATCTCTCAATGGACTTTGAGAATGAGATGATCTCAGGATCTGTGTTAGGGGAAGATCGTTTGTCAAAAACTTCATCCCCTTCTACTCCTTCTACTTGTTCCACTTCAGCTTTTAGTTGGAATGACTTCCTTCTTCTAGAAGATGATTTTACACCACTTGACTACCAGGAAACAGACACCCTGGTTTCAAAGGAGAATGTGGTGACCATACAGAGTTGGAATAGCAAAGAGGTGAAGTCACATCATGCCTCGGGTAGTAGTGACTTCCAATTTTCATCATCCTCTCACACTTCATTCATAGAAGCCATGCTTGATCAAGAAAATGAAATGTTTCTGAGTTTTCCACACCTTATGGAGGAACCATCCAACTTGAGTTAA 960 0.4198 MVRSPCEKVNVKRGVWATEEDTKKLAFGSKHGSGNWTSVPRKTRLKRCGKSCRLRWSNCLRNDLKHDNFTTQEEDLIIKLHAAIGSRWSIIAQQLPGRTDNDVKIYWNTKLKKKLSEMGIDPVTHKPFSKLIADYGNIGGCQKPSTRIGSINKDFKSAMMLKSEPHQTMPQGSTNINDQETTRNNFLFNRAHGDNLSMDFENEMISGSVLGEDRLSKTSSPSTPSTCSTSAFSWNDFLLLEDDFTPLDYQETDTLVSKENVVTIQSWNSKEVKSHHASGSSDFQFSSSSHTSFIEAMLDQENEMFLSFPHLMEEPSNLS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium747g00001 319 FunFam Os07g0634900 protein 68 127 - -
Vium747g00001 319 CDD SANT 68 111 IPR001005 -
Vium747g00001 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vium747g00001 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vium747g00001 319 Pfam Myb-like DNA-binding domain 68 109 IPR001005 -
Vium747g00001 319 Pfam Myb-like DNA-binding domain 13 59 IPR001005 -
Vium747g00001 319 Gene3D - 68 127 - -
Vium747g00001 319 PANTHER F14D16.11-RELATED 1 316 - -
Vium747g00001 319 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vium747g00001 319 Gene3D - 6 66 - -
Vium747g00001 319 SMART sant 12 62 IPR001005 -
Vium747g00001 319 SMART sant 65 113 IPR001005 -
Vium747g00001 319 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vium747g00001 319 CDD SANT 16 58 IPR001005 -
Vium747g00001 319 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium747g00001 Vium-Chr747 11427 12834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium747g00001 1 314 MYB Transcription Factor Family AT3G28470 40.741 2.13e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium747g00001 Myb_DNA-binding 1.3e-06 CL0123