Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7479g00001 ATGTATGCTAAAAATACTCTCATGGAAAACATAGACAGCTCAGAACTTTCACACCAATCTCAAAACCAAAACAAGAATCTTTCTTTGATGGCTATTGAAATAGACAAGCCCTATGAGAAGAGAGTGATGAAGATTCCAAAAGTAGGAAAAAAGATTGAGAAAAAGTTTCTTGGGGTGAGACAAAGACCTTCAGGAAGGTGGATTGCTGAGATCAAGGATTCCTCACAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAAGCTGCCTTGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGGAGAAATGCCAAAACAAACTTTCCAAACCCTGGAATCATGAACACTCATGAAGAAGACTACAGCATTTTGGGCAAGAATCCAAGGTCTTACCAACTTCTTAAGCATGCAGTTATGAAGAACCATGCACTTTCAGCATCTCTTTATTCCACATTCATGCCCAGCTGGAAAAACCAGATCATGCTGAGAGATGAACACGACACCCTTGTTGAGGAAACTATAGTTTGTTCCATTCCGGAACAAGGCTCTGCCTGCTGTGGAATTTCTTTCGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGTTTCTTCTCATGATGAAACCCCCTAA 654 0.4067 MYAKNTLMENIDSSELSHQSQNQNKNLSLMAIEIDKPYEKRVMKIPKVGKKIEKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDKAEEAALAYDCAARLLRGRNAKTNFPNPGIMNTHEEDYSILGKNPRSYQLLKHAVMKNHALSASLYSTFMPSWKNQIMLRDEHDTLVEETIVCSIPEQGSACCGISFGSSKVYSSVVVAPSFSVSSHDETP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7479g00001 217 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Vium7479g00001 217 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Vium7479g00001 217 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Vium7479g00001 217 FunFam ethylene-responsive transcription factor RAP2-11 54 113 - -
Vium7479g00001 217 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Vium7479g00001 217 MobiDBLite consensus disorder prediction 1 22 - -
Vium7479g00001 217 CDD AP2 54 113 IPR001471 GO:0003700|GO:0006355
Vium7479g00001 217 MobiDBLite consensus disorder prediction 7 22 - -
Vium7479g00001 217 SUPERFAMILY DNA-binding domain 55 112 IPR016177 GO:0003677
Vium7479g00001 217 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Vium7479g00001 217 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 138 - -
Vium7479g00001 217 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7479g00001 Vium-Chr7479 15022 15958 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7479g00001 50 113 AP2-EREBP Transcription Factor Family AT5G19790 68.750 6.02e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium7479g00001 AP2 2.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7479g00001 - K09286 var:108340966 410.609