Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7478g00001 ATGACACCCAATGTTCAAATACCCCTCTGGGACTCCGCCGCCGCAGACGGAGGACCGGTCTCCCCGTTCTCTCCCAATGCGCCCGACACCGCCTCCTTCTCCACCGATCATTTCCGGATGTTCCACTTCAAGGTCCTCACCTGTCCACGTGGCAGGGCCCACGACTGGACCGAGTGTCCCTACGCCCACCCCGCCGAGAAGGCTCGCCGCCGGGACCCCCGCAAGTTCCTCTACTCCGCCACGGCGTGCCCTGATTACCGGAAGGGGAACTGCAAGAGGGGTGACACGTGTCAGTTTGCGCATGGCGTGTTCGAGTGCTGGCTCCACCCTTCTCGCTACAGAACCCACCTCTGTAAAGACGGGACTAACTGCCGCCGCAGAGTTTGCTTCTTCGCTCACACCAACGACCAGCTCCGCCTCGCACCCGATTCGTCCTCTCTTTCCTCTCCCACTTCGGTTATCACCTCTTCCTTCTTCGATTCTCCACCCTCTTCTCCTTACGTCCACAACATACAAGAGATAGTTAGTTCAATGCGGAATGTTCAACTGGAGGATGGACTTTTCTCGGGTTTGACCCGGTGCGTGTTCGGGTCAACAAGTGGCGGTATTTTGAGTGGTAATGGGTGTGAGGAAGAAGAGCCTGCTATGGAGAGAGTGGAATCTGGGAGAGATATTAGGGCGAGAATATACGCGAAGCTTAGCAGGGAGAATTCCATTGCAGGTTCTGCTCCTCACGTTGGATGGGTCTCGGAACCGGTGAATGGATTCCGGGGCCTTTGA 780 0.5705 MTPNVQIPLWDSAAADGGPVSPFSPNAPDTASFSTDHFRMFHFKVLTCPRGRAHDWTECPYAHPAEKARRRDPRKFLYSATACPDYRKGNCKRGDTCQFAHGVFECWLHPSRYRTHLCKDGTNCRRRVCFFAHTNDQLRLAPDSSSLSSPTSVITSSFFDSPPSSPYVHNIQEIVSSMRNVQLEDGLFSGLTRCVFGSTSGGILSGNGCEEEEPAMERVESGRDIRARIYAKLSRENSIAGSAPHVGWVSEPVNGFRGL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7478g00001 259 PANTHER UNKEMPT FAMILY MEMBER 24 253 IPR045234 -
Vium7478g00001 259 SMART c3hfinal6 77 103 IPR000571 GO:0046872
Vium7478g00001 259 SMART c3hfinal6 112 135 IPR000571 GO:0046872
Vium7478g00001 259 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 102 IPR000571 GO:0046872
Vium7478g00001 259 Gene3D - 77 140 - -
Vium7478g00001 259 ProSiteProfiles Zinc finger C3H1-type profile. 77 104 IPR000571 GO:0046872
Vium7478g00001 259 SUPERFAMILY CCCH zinc finger 76 106 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7478g00001 Vium-Chr7478 5336 6219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7478g00001 22 160 C2H2 Transcription Factor Family AT5G12850 60.000 7.83e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium7478g00001 zf-CCCH 8.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7478g00001 - K23048 gmx:100786368 361.303