Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7476g00001 GGTCATTCAAGTCTAGATTTTCTAAGGGTGGATTCGACAAGGGATTATGGTGAACTAGACGGGGAAAATTGGACTGATCAAGAAACTTTACTGCTTCTTGAAGCAATGGAGATTTACAATGAGAATTGGAACGAAATTGCTGAGCATGTTGGTACCAAATCAAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCCATGGAAGATGGAAAATTGGAAAATATTAATGTTCCGAGCACACATTTGTCATCCAATGCAATGGATAGAGATGGTAGTGGAAGACTGCATTGTTACTCAAACGGAGATACTGCAGGACCTGTCCATCAAGTGAGAGATTCTGACAGCCGGCTTCCTTTTGCAAATTCTGGAAATCCTGTTATGGCTTTGGTTGCCTTTTTAGCCTCTGCAGTTGGACCAAGAGTAGCTGCTTCTTGTGCTCATGCAGCATTAGCAGTATTGTCAGTGGATAATTCTGGCAGCACTTCACAGGTGGAAGCACCTGGGCATGATAATAGGACAAATTCCGAAAGCATACGATGTCGAGATGGTGGGTCTCACGGAGAAACAGCGGTATCAAATAATAATAATAATGAGGATAAGGCTAAGGTACATGGTTCATGGGGACTAAATGATGGTAGGACAACCCCACTATCTGCTGAGAAAGTTAAAGATGCTGCTAAAGCAGGCCTCTCTGCGGCAGCAATGAAAGCAAAATTATTTGCCGATCATGAAGAGCGAGAAATTCAGAGGTTGTGTGCTAACATAGTTAATCATCAGCTGAAAAGATTAGAGTTGAAGCTGAAACAGTTTGCGGAAATCGAAACATTGTTAATGAAAGAATGCGAACAACTGGAGAGAACAAAGCAAAGGTTTGCTGCTGAACGGTCTCGTGTAATATCAGCACGTCTTGGAACTGCAGGAGCCACACCCACAATGGCTGTATCGGGTGTTGGTCCTTCAATGGCTAGCAATGGCAACAACAGGCAACAAATGATCTCTGCTTCTCCCTCACAGCCCAGCATCTCAGGGTATGGCAGCAAACAATCACTTCATCCACATATGTCCTTTGCCCCACGACCTTCGATGTTTGGATTGGGACAAAGATTACCGCTATCTATGATACAACAATCACAATCACCTTCTTCAACTGCCATGTTCAATGCCCCTAGTAATGTGCAGCCCACGTCCAATCATCCATTGTTGAGGCCTGTATCAGGAACAAACTCTGGTTTAGGTTAA 1239 0.4358 GHSSLDFLRVDSTRDYGELDGENWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSTHLSSNAMDRDGSGRLHCYSNGDTAGPVHQVRDSDSRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALAVLSVDNSGSTSQVEAPGHDNRTNSESIRCRDGGSHGETAVSNNNNNEDKAKVHGSWGLNDGRTTPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQLERTKQRFAAERSRVISARLGTAGATPTMAVSGVGPSMASNGNNRQQMISASPSQPSISGYGSKQSLHPHMSFAPRPSMFGLGQRLPLSMIQQSQSPSSTAMFNAPSNVQPTSNHPLLRPVSGTNSGLG 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7476g00001 412 MobiDBLite consensus disorder prediction 374 412 - -
Vium7476g00001 412 ProSiteProfiles SANT domain profile. 19 70 IPR017884 -
Vium7476g00001 412 PANTHER SWI/SNF COMPLEX-RELATED 21 299 - -
Vium7476g00001 412 CDD SANT 23 65 IPR001005 -
Vium7476g00001 412 ProSiteProfiles Myb-like domain profile. 23 66 IPR001005 -
Vium7476g00001 412 SMART sant 20 68 IPR001005 -
Vium7476g00001 412 MobiDBLite consensus disorder prediction 158 214 - -
Vium7476g00001 412 Pfam Myb-like DNA-binding domain 23 65 IPR001005 -
Vium7476g00001 412 Gene3D - 20 70 - -
Vium7476g00001 412 FunFam SWI/SNF complex subunit SMARCC2 isoform C 20 70 - -
Vium7476g00001 412 MobiDBLite consensus disorder prediction 187 201 - -
Vium7476g00001 412 Pfam SWIRM-associated region 1 228 305 IPR032451 -
Vium7476g00001 412 SUPERFAMILY Homeodomain-like 21 75 IPR009057 -
Vium7476g00001 412 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7476g00001 Vium-Chr7476 6 2989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7476g00001 23 62 EF-hand Containing Proteins AT3G07740 48.780 6.21e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium7476g00001 SWIRM-assoc_1 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7476g00001 K11649 - gmx:100780440 730.709