Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7470g00003 ATGGGGAAAAATGAGTTTCTCACACCAAAAGCAATTGCCAATCGAATCAAAGCAAAAGGATTGCAGAAGCTTCGATGGTATTGCCAGATGTGCCAGAAGCAGTGCCGAGATGAGAATGGATTTAAATGCCATTGTATGAGTGAAGGACATCAGCGACAAATGCAAATTTTTGGACAAAACCCACACCGTATAGTTGAGGGCTATTCCGAAGAGTTTGAGAGCTCATTTCTAGAGCACATGAAGCGCAGTCATCGATTCAGCCGTGTCGCAGCCACTGTAGTTTATAACGAATACATAAATGATAGGCACCATGTTCATATGAACTCCACCCAGTGGGCAACTCTTACTGAATTTGTCAAGTACTTGGGTCGAACTGGCAAATGTAAGGTCGAGGAAACACCCAAGGGATGGTTCATTACATACATAGACAGAGATTCAGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAGGCAGATATGGCAGATGAAGAAAAGCAAGAGAAGGAGATCAGAAAACAGATTGAAATGGCTGAGCAAATGATGCAGCAGCCTACTCCTGAGGCTGATGAGCCTTCACAATCTGAGCCTCCAAGGGAACTAAATATGGAAGATGGAATTAAGATAGGGTTTTCTCTTGGGTCTTCATTGGTTAAACAACCTGTGACCAAGGAAAAACGTGAGGCATCAAGGGTGGTGTTTGAGGAGGCTGATGAAGAGAAATATGGGGAAAGAAATCCTGGAAACAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAACTTTGGAGGAAATGATGAGGGATGAAGAGAAGAAAAAGGAAAAAATCAACCGGAAGGATTACTGGTTGCACCAGGGAATTGTTGTTAAGGTTATGAGCAAAGTTTTGGCAGAGAAGGGCTACTACAAGCAAAAGGGTGTTGTGCGGAAGGTGGTTGACAAGTATGTTGGGGAAATAGAAATTCTTGAAAGTAAGCATGTGCTCAAAGTTGATCAGGCAGAGCTTGAAACTGTGATTCCACAAGTTGGTGGCCGTGTTAAAATTGTCAACGGCGCGTATAGAGGATCAATTGCTAAGTTGTTGGGCGTGGATACAGATAATTTTTGTGCTAAGGTGCAGATCGAGAAAGGACCCTATGATGGCAGAGTGCTTAAAGCTATGGAATACGAGGACATTTGTAAACTAGCCTAG 1200 0.4275 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPHRIVEGYSEEFESSFLEHMKRSHRFSRVAATVVYNEYINDRHHVHMNSTQWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMADEEKQEKEIRKQIEMAEQMMQQPTPEADEPSQSEPPRELNMEDGIKIGFSLGSSLVKQPVTKEKREASRVVFEEADEEKYGERNPGNNLKRKESGGGKSTLEEMMRDEEKKKEKINRKDYWLHQGIVVKVMSKVLAEKGYYKQKGVVRKVVDKYVGEIEILESKHVLKVDQAELETVIPQVGGRVKIVNGAYRGSIAKLLGVDTDNFCAKVQIEKGPYDGRVLKAMEYEDICKLA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7470g00003 399 Coils Coil 262 282 - -
Vium7470g00003 399 Pfam KN17 SH3-like C-terminal domain 281 334 IPR041330 -
Vium7470g00003 399 FunFam DNA/RNA-binding protein kin17-like 289 342 - -
Vium7470g00003 399 Gene3D - 60 160 IPR038254 -
Vium7470g00003 399 MobiDBLite consensus disorder prediction 237 270 - -
Vium7470g00003 399 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 399 IPR037321 -
Vium7470g00003 399 Gene3D - 343 399 IPR014722 -
Vium7470g00003 399 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
Vium7470g00003 399 CDD KOW_KIN17 345 398 IPR041995 -
Vium7470g00003 399 MobiDBLite consensus disorder prediction 184 203 - -
Vium7470g00003 399 FunFam DNA/RNA-binding protein KIN17, putative 343 399 - -
Vium7470g00003 399 Coils Coil 154 186 - -
Vium7470g00003 399 SMART Kin17_mid_2 52 178 IPR019447 -
Vium7470g00003 399 Gene3D - 289 342 - -
Vium7470g00003 399 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Vium7470g00003 399 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7470g00003 Vium-Chr7470 22058 25328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7470g00003 1 399 C2H2 Transcription Factor Family AT1G55460 68.182 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7470g00003 K13102 - gmx:100785931 748.814