Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium7470g00002 | ATGGTTCAACCAAGTAATATAAATCCCCTATCATCCACCCCACTTTCTTCCTCCGATGACAACACCTTTGATGATGTTACTGATTCATCCACTCATCCAAAATCTCCCTCCTCCTCATCATCATCAAAGAGGACACGCGGTAGGCCTGTGGGCTCCAAGAACAAACCAAAATTAACCCTTGTGATTGACCAAGACAACAAGCATACCCAAAAACCTATTTTCATTCAAATCCCTAAAAATTCTGATGTGATTGAGGCATTGATCCAATTCGCCTATGATTACCAAATTAGCATCACGGTGCAAAGTGCTTCAGGATCTATTATGAACGTCACTCTCCGTGATAGTGAATCCACAACTTCTACGTTCATTGTTCATGGACCCTTCACATTAGTTTCCCTCATTGGCACTTGCATAAATAACAACTCTTGTACTGTTTCATCACTGTCTAATCTTGACATTGATTGTTTTTTTAACATTTCCTTTTGTTCAAATATAGGTCAAAGCTTTATTGGAGTTGTTGGAGGGAAGATTATCGCAGGTGATGATGTTATTGTAGCAGCTACTATTTTGAATAGCTTTGAGAATAACAAAAGTGAAAACCAATTATGA | 609 | 0.3842 | MVQPSNINPLSSTPLSSSDDNTFDDVTDSSTHPKSPSSSSSSKRTRGRPVGSKNKPKLTLVIDQDNKHTQKPIFIQIPKNSDVIEALIQFAYDYQISITVQSASGSIMNVTLRDSESTTSTFIVHGPFTLVSLIGTCINNNSCTVSSLSNLDIDCFFNISFCSNIGQSFIGVVGGKIIAGDDVIVAATILNSFENNKSENQL | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium7470g00002 | 202 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Vium7470g00002 | 202 | ProSiteProfiles | PPC domain profile profile. | 67 | 202 | IPR005175 | - | |
| Vium7470g00002 | 202 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 21 | 190 | IPR014476 | GO:0003680 | |
| Vium7470g00002 | 202 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 71 | 188 | IPR005175 | - | |
| Vium7470g00002 | 202 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 70 | 187 | - | - | |
| Vium7470g00002 | 202 | CDD | DUF296 | 71 | 189 | IPR005175 | - | |
| Vium7470g00002 | 202 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
| Vium7470g00002 | 202 | Gene3D | - | 71 | 201 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium7470g00002 | Vium-Chr7470 | 15546 | 16243 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium7470g00002 | 43 | 202 | AT-hook Motif Nuclear Localized (AHL) Family | AT5G49700 | 37.654 | 7.99e-23 | 91.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium7470g00002 | - | - | var:108336502 | 348.591 |