Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium746g00017 ATGTTCGATGGAGTATCAGACCAGTTCCACCAATTCATAGCACCAAGGACCACTCTTCCTCTTCACTTGTCTTTCCCTCTTCATGCCTCTTCAACTTCCCCAACTACCTTCTTACCCTTTGATCCCTATAACCCTTCTCAATCTCAGCAACACCATTTTCCACTCCAAACCAATCTCTTTCACCCATTGCACCCTCCTTCTCCTCCTACCCACAAACACAAGCTTCCTTCAATCCACATTCACACTCACCAAACTCAATTACCAGACCTAACCGATTCCTGGTCCAACGATGAACTCCTTGCACTTTTCAGAATCAGATCTACCATGGAAAATTGCTTCCCGGAGCACACATGGGACCATGTCTCCAGGAAGCTGGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTCGAAGATGAGAGTGGATATTTCGACAACGTTAGTAACTACGGCAAGAACAATTACCGGTTCCTTAGCGAGCTGGAGGAGCTTTGTCAAAACCCTGATTCGGGTGGTGGTGGTGGTGGTGATTGTGACGGTGGTGATGATGGAATCGTGAGGAGTGAAAAGACCCTCCTCCACCTTGGAGCAGACAACATGGGTCATCGACAATGTGATGGAACAGATGACAAGGTTGTGGTGGAGAAGTCAAAGGAGCGAAAGAGGAAGAGGCGTGACAGGTTCGAAATGTTCAAGGGTTTTTGCGAGAGTTTTGTCAACAAGATGATGGCTCAACAGGAAGAGATTCACAACAGGCTCCTGGAGGACATGGTGAAAAGGGACCAAGAGAAGTTTGCCAGAGAGGAAGCATGGAAGAAGCAAGAGATGGAGAAGATGAACAAGGAGCTTGACATCATGGCACAGGAGCAAGCTATCGCCGGAGACAGACATGCCACCATAATTGAATTCTTAAAGAAATGTGCAACAAAAACAATAACTACGTCAACAACTTCACCATCTCCTCCAAGCCAAAATGCCAACGGTTCGAATCTTCCAAATCGTTCATTATTGCACTCACTAAACCCTAATAGTCCTTCCAATGAAGACAACAACCTCGATCCAACACCAACGCTTCTGAATCATGATGAAACTAAGTTAAGAGCAGAAAACCCTAGTTCGAGTGAGACATTATTACAAGTTCCTTCTTCCTCCAACTCATCCCCAACTCCCCACAACCCTAGTTCTTCCCTCAATAGCCAAAACAATACTATCCCATTAGAGTCGAATTCAGTTTCGACGTACAAGACAACCTCAACAACCCCACCAGGAAGCACTGAGAATTCGAAAGATGATGTTGGGAGAAGATGGCCAAGGGATGAAGTGCTAGCACTGATAAACCTGAGGTGCACGAGTGTAAGTAACAACAACAACAGCAGCAGTGAAGAAAAAGAAGGAAATAACAAGGGTCCTCTGTGGGAGAGAATCTCGCAAGGGATGTCAGAGGTGGGATACAAGAGAAGCGCAAAGAGATGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACTAAGGATGTTAACAAGAAAAGGTCCCTTAATTCTAGGACCTGTCCCTATTTCCATCAACTGAGTTGCTTGTATGGTCAGGGAAAAATCGTGGCAGCACAGTCGGAAAGAGAAGGGAACTACATGAGTCCAACCGCGAATTCCGGCCAAGTGCCACCGGATGTTGATGATGAAGATGAGTCTTCTCATGTGGGGTCTGGTGGTTTGGATCATTATGCATGTTAA 1749 0.4574 MFDGVSDQFHQFIAPRTTLPLHLSFPLHASSTSPTTFLPFDPYNPSQSQQHHFPLQTNLFHPLHPPSPPTHKHKLPSIHIHTHQTQLPDLTDSWSNDELLALFRIRSTMENCFPEHTWDHVSRKLAELGFKKSAEKCKEKFEDESGYFDNVSNYGKNNYRFLSELEELCQNPDSGGGGGGDCDGGDDGIVRSEKTLLHLGADNMGHRQCDGTDDKVVVEKSKERKRKRRDRFEMFKGFCESFVNKMMAQQEEIHNRLLEDMVKRDQEKFAREEAWKKQEMEKMNKELDIMAQEQAIAGDRHATIIEFLKKCATKTITTSTTSPSPPSQNANGSNLPNRSLLHSLNPNSPSNEDNNLDPTPTLLNHDETKLRAENPSSSETLLQVPSSSNSSPTPHNPSSSLNSQNNTIPLESNSVSTYKTTSTTPPGSTENSKDDVGRRWPRDEVLALINLRCTSVSNNNNSSSEEKEGNNKGPLWERISQGMSEVGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLNSRTCPYFHQLSCLYGQGKIVAAQSEREGNYMSPTANSGQVPPDVDDEDESSHVGSGGLDHYAC 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium746g00017 582 FunFam Trihelix transcription factor GT-2 94 150 - -
Vium746g00017 582 CDD GT1 438 510 - -
Vium746g00017 582 Pfam Myb/SANT-like DNA-binding domain 92 156 IPR044822 -
Vium746g00017 582 Pfam Myb/SANT-like DNA-binding domain 438 529 IPR044822 -
Vium746g00017 582 MobiDBLite consensus disorder prediction 317 439 - -
Vium746g00017 582 PANTHER FI21293P1 79 561 - -
Vium746g00017 582 ProSiteProfiles Myb-like domain profile. 439 503 IPR001005 -
Vium746g00017 582 MobiDBLite consensus disorder prediction 374 431 - -
Vium746g00017 582 Gene3D - 440 508 - -
Vium746g00017 582 Gene3D - 94 149 - -
Vium746g00017 582 MobiDBLite consensus disorder prediction 456 475 - -
Vium746g00017 582 MobiDBLite consensus disorder prediction 317 362 - -
Vium746g00017 582 MobiDBLite consensus disorder prediction 548 582 - -
Vium746g00017 582 FunFam Trihelix transcription factor GTL2 440 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium746g00017 Vium-Chr746 108787 111689 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium746g00017 232 535 Trihelix Transcription Factor Family AT5G28300 47.403 1.45e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium746g00017 Myb_DNA-bind_4 4.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium746g00017 - - vra:106774627 1024.23