Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium746g00016 ATGGATCTCCTCTCCAAATTAAGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATTATTATAGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTGGTGGTGTTATGTTCCCTGAGGAGAAACTATGTAAGTGGCTTGTTCAACTTCTTATGGCGCTTGATTACTTGCATGCGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCCGATGATCTAACTTCCTCTGTTGTCGGAACTCCTAGCTATATGTGTCCTGAACTCCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCCTTGGATGTTGTATATATGAAATGACCTCGCTTAAGCCTGCATTCAAAGCATTTGATATACAGTCCCTGATTAACAAAATTAACAAGTCCATAGTGGCTCCATTGCCAACAAAATATTCTGGTGCATTTCGTGGTCTTGTCAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAGCTACTCGGGAACCAACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCAAGGCGAAGTACTTTGCCAGGTCTTTGGCAAGAATCCAACTACGTGAAGAAAGCAAGATTTTTGAAGTCAGAAGATGATCGTGTTTCTGTCTCTGGATATAAGTGGCATTCTATTAGCAATGATAGGACTTTAAATCCCAATGTATCAGGAGCAGAGGTAGATTCTCTATGCTCTACGCTAGAAATAGACTGTACTCCTGATAATATAAATCAAAGATTTGCTAAACTTTCTATTGGAGACAACCACGATTTGAAGTCACGGCATAATTCAGTTGTTTCAAGAACTTCTAGCAATGCCAGGACTCCTACGCTAACTGCATCAAAAGCTTCTGCCACCCCCAAGAAATCAATGCTATCCTCAAAGAATCATAAGACGCTTCCTGTTTCACACAACATGAAACAACCTGTCCATACAACTCGCAGAGCATCATTGCCGTTCCCACGAAGTTGTGCCATTCAGCTGCCTCCTTGCAGGTCCAGTACTGGTTTACTTTGCCATGTAACTTCACCCAATATTTCAGTCAATTCTCCCCGGATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGACCAATTGTTTCCCATCAATAGATCTTCACCAAACTCGGCACAGGGTTCCTCAGGTTCCCCTCCTTGTGGCAATGATTCAACATTGGTAGACAAATGCACAATCAAGGTATGTGACACATCCTATGTTACGCCAGGATGTACGTATGCTTGGCAGGGAATCAAGCGCAGCGTGCTCAAGAAAAACAATGAGGATAAAAGTGGCTCATCTGATCAAAATGCAACAGCTGGAGCATCAAGCCACAACTCTTCAGACTTGCACTGCCGGCAGTTTGATACATCATCATTCCAACAAAGGGCGGAGGCATTAGAAGGTCTGCTTGAATTTAGTGCAAGATTACTGCAGCAGGAAAGGTATGGAGAACTCGGAGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCCCCAAGAGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGAGAACACTTTCAGCAGAGAACAATCGACTTAA 1713 0.4191 MDLLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKAGGVMFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQSLINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGNQHLQPYVLKVHLKINSPRRSTLPGLWQESNYVKKARFLKSEDDRVSVSGYKWHSISNDRTLNPNVSGAEVDSLCSTLEIDCTPDNINQRFAKLSIGDNHDLKSRHNSVVSRTSSNARTPTLTASKASATPKKSMLSSKNHKTLPVSHNMKQPVHTTRRASLPFPRSCAIQLPPCRSSTGLLCHVTSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNSAQGSSGSPPCGNDSTLVDKCTIKVCDTSYVTPGCTYAWQGIKRSVLKKNNEDKSGSSDQNATAGASSHNSSDLHCRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFSREQST 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium746g00016 570 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 520 - -
Vium746g00016 570 Gene3D Transferase(Phosphotransferase) domain 1 1 255 - -
Vium746g00016 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 74 86 IPR008271 GO:0004672|GO:0006468
Vium746g00016 570 FunFam Serine/threonine-protein kinase Nek2 33 223 - -
Vium746g00016 570 Pfam Protein kinase domain 2 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium746g00016 570 MobiDBLite consensus disorder prediction 311 343 - -
Vium746g00016 570 SMART serkin_6 1 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium746g00016 570 SUPERFAMILY Protein kinase-like (PK-like) 2 208 IPR011009 -
Vium746g00016 570 MobiDBLite consensus disorder prediction 308 343 - -
Vium746g00016 570 MobiDBLite consensus disorder prediction 480 498 - -
Vium746g00016 570 ProSiteProfiles Protein kinase domain profile. 1 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium746g00016 570 MobiDBLite consensus disorder prediction 474 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium746g00016 Vium-Chr746 92928 98783 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium746g00016 1 244 MAP Kinase Kinase Kinase AT1G53570 31.179 1.33e-31 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vium746g00016 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium746g00016 K08857 - gmx:100796019 1035.02