Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium746g00015 ATGTTGTATCCTTATTGCATGTACAATGAGAAAGGGAGAAAGTTTTGCCTTCAATCTTATGTGCTTTTTAAGGAACTTCCTCTGGCATTTTGGTTAAATTCCTTCCGGAGAGAGGGAAATCTGTTGCTAACTGATAACATGGAGCAGTACGAAGTGCTTGAGCAAATTGGAAAAGGCGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAATTTGTCTTTTCAATTATGTAGATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGGTCTGCTCACCTGGAGATGGATCTCCTCTCCAAATTAAGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATTATTATAGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTGGTGGTGTTATGTTCCCTGAGGAGAAACTATGTAAGTGGCTTGTTCAACTTCTTATGGCGCTTGATTACTTGCATGCGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCCGATGATCTAACTTCCTCTGTTGTCGGAACTCCTAGCTATATGTGTCCTGAACTCCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCCTTGGATGTTGTATATATGAAATGACCTCGCTTAAGCCTGCATTCAAAGCATTTGATATACAGTCCCTGATTAACAAAATTAACAAGTCCATAGTGGCTCCATTGCCAACAAAATATTCTGGTGCATTTCGTGGTCTTGTCAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAGCTACTCGGGAACCAACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCAAGGCGAAGTACTTTGCCAGGTCTTTGGCAAGAATCCAACTACGTGAAGAAAGCAAGATTTTTGAAGTCAGAAGATGATCGTGTTTCTGTCTCTGGATATAAGTGGCATTCTATTAGCAATGATAGGACTTTAAATCCCAATGTATCAGGAGCAGAGGTAGATTCTCTATGCTCTACGCTAGAAATAGACTGTACTCCTGATAATATAAATCAAAGATTTGCTAAACTTTCTATTGGAGACAACCACGATTTGAAGTCACGGCATAATTCAGTTGTTTCAAGAACTTCTAGCAATGCCAGGACTCCTACGCTAACTGCATCAAAAGCTTCTGCCACCCCCAAGAAATCAATGCTATCCTCAAAGAATCATAAGACGCTTCCTGTTTCACACAACATGAAACAACCTGTCCATACAACTCGCAGAGCATCATTGCCGTTCCCACGAAGTTGTGCCATTCAGCTGCCTCCTTGCAGGTCCAGTACTGGTTTACTTTGCCATGTAACTTCACCCAATATTTCAGTCAATTCTCCCCGGATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGACCAATTGTTTCCCATCAATAGATCTTCACCAAACTCGGCACAGGGTTCCTCAGGTTCCCCTCCTTGTGGCAATGATTCAACATTGGTAGACAAATGCACAATCAAGGTATGTGACACATCCTATGTTACGCCAGGATGTACGTATGCTTGGCAGGGAATCAAGCGCAGCGTGCTCAAGAAAAACAATGAGGATAAAAGTGGCTCATCTGATCAAAATGCAACAGCTGGAGCATCAAGCCACAACTCTTCAGACTTGCACTGCCGGCAGTTTGATACATCATCATTCCAACAAAGGGCGGAGGCATTAGAAGGTCTGCTTGAATTTAGTGCAAGATTACTGCAGCAGGAAAGGTATGGAGAACTCGGAGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCCCCAAGAGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGAGAACACTTTCAGCAGAGAACAATCGACTTAA 2025 0.4188 MLYPYCMYNEKGRKFCLQSYVLFKELPLAFWLNSFRREGNLLLTDNMEQYEVLEQIGKGAFGSALLVKHKHEKKNLSFQLCRYVLKKIRLARQTERSRRSAHLEMDLLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKAGGVMFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQSLINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGNQHLQPYVLKVHLKINSPRRSTLPGLWQESNYVKKARFLKSEDDRVSVSGYKWHSISNDRTLNPNVSGAEVDSLCSTLEIDCTPDNINQRFAKLSIGDNHDLKSRHNSVVSRTSSNARTPTLTASKASATPKKSMLSSKNHKTLPVSHNMKQPVHTTRRASLPFPRSCAIQLPPCRSSTGLLCHVTSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNSAQGSSGSPPCGNDSTLVDKCTIKVCDTSYVTPGCTYAWQGIKRSVLKKNNEDKSGSSDQNATAGASSHNSSDLHCRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFSREQST 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium746g00015 674 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 47 624 - -
Vium746g00015 674 Gene3D Transferase(Phosphotransferase) domain 1 137 323 - -
Vium746g00015 674 Gene3D Phosphorylase Kinase; domain 1 33 136 - -
Vium746g00015 674 MobiDBLite consensus disorder prediction 578 602 - -
Vium746g00015 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Vium746g00015 674 CDD STKc_Nek 49 311 - -
Vium746g00015 674 MobiDBLite consensus disorder prediction 415 447 - -
Vium746g00015 674 Pfam Protein kinase domain 50 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium746g00015 674 ProSiteProfiles Protein kinase domain profile. 50 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium746g00015 674 SMART serkin_6 50 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium746g00015 674 SUPERFAMILY Protein kinase-like (PK-like) 40 343 IPR011009 -
Vium746g00015 674 ProSitePatterns Protein kinases ATP-binding region signature. 56 86 IPR017441 GO:0005524
Vium746g00015 674 MobiDBLite consensus disorder prediction 584 602 - -
Vium746g00015 674 MobiDBLite consensus disorder prediction 412 447 - -
Vium746g00015 674 FunFam Serine/threonine-protein kinase Nek2 137 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium746g00015 Vium-Chr746 92928 99320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium746g00015 56 348 MAP Kinase Kinase Kinase AT1G53570 29.206 2.90e-33 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vium746g00015 Pkinase 2.2e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium746g00015 K08857 - gmx:100796019 1124.38