Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium746g00014 ATGTTGTATCCTTATTGCATGTACAATGAGAAAGGGAGAAAGTTTTGCCTTCAATCTTATGTGCTTTTTAAGGAACTTCCTCTGGCATTTTGGTTAAATTCCTTCCGGAGAGAGGGAAATCTGTTGCTAACTGATAACATGGAGCAGTACGAAGTGCTTGAGCAAATTGGAAAAGGCGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGGTCTGCTCACCTGGAGATGGATCTCCTCTCCAAATTAAGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATTATTATAGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTGGTGGTGTTATGTTCCCTGAGGAGAAACTATGTAAGTGGCTTGTTCAACTTCTTATGGCGCTTGATTACTTGCATGCGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCCGATGATCTAACTTCCTCTGTTGTCGGAACTCCTAGCTATATGTGTCCTGAACTCCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCCTTGGATGTTGTATATATGAAATGACCTCGCTTAAGCCTGCATTCAAAGCATTTGATATACAGTCCCTGATTAACAAAATTAACAAGTCCATAGTGGCTCCATTGCCAACAAAATATTCTGGTGCATTTCGTGGTCTTGTCAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAGCTACTCGGGAACCAACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCAAGGCGAAGTACTTTGCCAGGTCTTTGGCAAGAATCCAACTACGTGAAGAAAGCAAGATTTTTGAAGTCAGAAGATGATCGTGTTTCTGTCTCTGGATATAAGTGGCATTCTATTAGCAATGATAGGACTTTAAATCCCAATGTATCAGGAGCAGAGGTAGATTCTCTATGCTCTACGCTAGAAATAGACTGTACTCCTGATAATATAAATCAAAGATTTGCTAAACTTTCTATTGGAGACAACCACGATTTGAAGTCACGGCATAATTCAGTTGTTTCAAGAACTTCTAGCAATGCCAGGACTCCTACGCTAACTGCATCAAAAGCTTCTGCCACCCCCAAGAAATCAATGCTATCCTCAAAGAATCATAAGACGCTTCCTGTTTCACACAACATGAAACAACCTGTCCATACAACTCGCAGAGCATCATTGCCGTTCCCACGAAGTTGTGCCATTCAGCTGCCTCCTTGCAGGTCCAGTACTGGTTTACTTTGCCATGTAACTTCACCCAATATTTCAGTCAATTCTCCCCGGATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGACCAATTGTTTCCCATCAATAGATCTTCACCAAACTCGGCACAGGGTTCCTCAGGTTCCCCTCCTTGTGGCAATGATTCAACATTGGTAGACAAATGCACAATCAAGGTATGTGACACATCCTATGTTACGCCAGGATGTACGTATGCTTGGCAGGGAATCAAGCGCAGCGTGCTCAAGAAAAACAATGAGGATAAAAGTGGCTCATCTGATCAAAATGCAACAGCTGGAGCATCAAGCCACAACTCTTCAGACTTGCACTGCCGGCAGTTTGATACATCATCATTCCAACAAAGGGCGGAGGCATTAGAAGGTCTGCTTGAATTTAGTGCAAGATTACTGCAGCAGGAAAGGTATGGAGAACTCGGAGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCCCCAAGAGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGAGAACACTTTCAGCAGAGAACAATCGACTTAA 2004 0.4207 MLYPYCMYNEKGRKFCLQSYVLFKELPLAFWLNSFRREGNLLLTDNMEQYEVLEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMDLLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKAGGVMFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQSLINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGNQHLQPYVLKVHLKINSPRRSTLPGLWQESNYVKKARFLKSEDDRVSVSGYKWHSISNDRTLNPNVSGAEVDSLCSTLEIDCTPDNINQRFAKLSIGDNHDLKSRHNSVVSRTSSNARTPTLTASKASATPKKSMLSSKNHKTLPVSHNMKQPVHTTRRASLPFPRSCAIQLPPCRSSTGLLCHVTSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNSAQGSSGSPPCGNDSTLVDKCTIKVCDTSYVTPGCTYAWQGIKRSVLKKNNEDKSGSSDQNATAGASSHNSSDLHCRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFSREQST 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium746g00014 667 Gene3D Transferase(Phosphotransferase) domain 1 130 316 - -
Vium746g00014 667 MobiDBLite consensus disorder prediction 571 595 - -
Vium746g00014 667 ProSitePatterns Protein kinases ATP-binding region signature. 56 79 IPR017441 GO:0005524
Vium746g00014 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Vium746g00014 667 Pfam Protein kinase domain 50 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium746g00014 667 Gene3D Phosphorylase Kinase; domain 1 33 129 - -
Vium746g00014 667 FunFam Serine/threonine-protein kinase Nek2 47 129 - -
Vium746g00014 667 MobiDBLite consensus disorder prediction 408 440 - -
Vium746g00014 667 MobiDBLite consensus disorder prediction 405 440 - -
Vium746g00014 667 FunFam Serine/threonine-protein kinase Nek2 130 320 - -
Vium746g00014 667 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 47 617 - -
Vium746g00014 667 SMART serkin_6 50 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium746g00014 667 MobiDBLite consensus disorder prediction 577 595 - -
Vium746g00014 667 CDD STKc_Nek 49 304 - -
Vium746g00014 667 ProSiteProfiles Protein kinase domain profile. 50 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium746g00014 667 SUPERFAMILY Protein kinase-like (PK-like) 47 305 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium746g00014 Vium-Chr746 92928 99320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium746g00014 56 341 MAP Kinase Kinase Kinase AT1G53570 29.545 6.13e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vium746g00014 Pkinase 1.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium746g00014 K08857 - gmx:100796019 1120.53