Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium746g00013 ATGGAGCAGTACGAAGTGCTTGAGCAAATTGGAAAAGGCGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAATTTGTCTTTTCAATTATGTAGATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGGTCTGCTCACCTGGAGATGGATCTCCTCTCCAAATTAAGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATTATTATAGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTGGTGGTGTTATGTTCCCTGAGGAGAAACTATGTAAGTGGCTTGTTCAACTTCTTATGGCGCTTGATTACTTGCATGCGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCCGATGATCTAACTTCCTCTGTTGTCGGAACTCCTAGCTATATGTGTCCTGAACTCCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCCTTGGATGTTGTATATATGAAATGACCTCGCTTAAGCCTGCATTCAAAGCATTTGATATACAGTCCCTGATTAACAAAATTAACAAGTCCATAGTGGCTCCATTGCCAACAAAATATTCTGGTGCATTTCGTGGTCTTGTCAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAGCTACTCGGGAACCAACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCAAGGCGAAGTACTTTGCCAGGTCTTTGGCAAGAATCCAACTACGTGAAGAAAGCAAGATTTTTGAAGTCAGAAGATGATCGTGTTTCTGTCTCTGGATATAAGTGGCATTCTATTAGCAATGATAGGACTTTAAATCCCAATGTATCAGGAGCAGAGGTAGATTCTCTATGCTCTACGCTAGAAATAGACTGTACTCCTGATAATATAAATCAAAGATTTGCTAAACTTTCTATTGGAGACAACCACGATTTGAAGTCACGGCATAATTCAGTTGTTTCAAGAACTTCTAGCAATGCCAGGACTCCTACGCTAACTGCATCAAAAGCTTCTGCCACCCCCAAGAAATCAATGCTATCCTCAAAGAATCATAAGACGCTTCCTGTTTCACACAACATGAAACAACCTGTCCATACAACTCGCAGAGCATCATTGCCGTTCCCACGAAGTTGTGCCATTCAGCTGCCTCCTTGCAGGTCCAGTACTGGTTTACTTTGCCATGTAACTTCACCCAATATTTCAGTCAATTCTCCCCGGATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGACCAATTGTTTCCCATCAATAGATCTTCACCAAACTCGGCACAGGGTTCCTCAGGTTCCCCTCCTTGTGGCAATGATTCAACATTGGTAGACAAATGCACAATCAAGGTATGTGACACATCCTATGTTACGCCAGGATGTACGTATGCTTGGCAGGGAATCAAGCGCAGCGTGCTCAAGAAAAACAATGAGGATAAAAGTGGCTCATCTGATCAAAATGCAACAGCTGGAGCATCAAGCCACAACTCTTCAGACTTGCACTGCCGGCAGTTTGATACATCATCATTCCAACAAAGGGCGGAGGCATTAGAAGGTCTGCTTGAATTTAGTGCAAGATTACTGCAGCAGGAAAGGTATGGAGAACTCGGAGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCCCCAAGAGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGAGAACACTTTCAGCAGAGAACAATCGACTTAA 1887 0.4218 MEQYEVLEQIGKGAFGSALLVKHKHEKKNLSFQLCRYVLKKIRLARQTERSRRSAHLEMDLLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKAGGVMFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQSLINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGNQHLQPYVLKVHLKINSPRRSTLPGLWQESNYVKKARFLKSEDDRVSVSGYKWHSISNDRTLNPNVSGAEVDSLCSTLEIDCTPDNINQRFAKLSIGDNHDLKSRHNSVVSRTSSNARTPTLTASKASATPKKSMLSSKNHKTLPVSHNMKQPVHTTRRASLPFPRSCAIQLPPCRSSTGLLCHVTSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNSAQGSSGSPPCGNDSTLVDKCTIKVCDTSYVTPGCTYAWQGIKRSVLKKNNEDKSGSSDQNATAGASSHNSSDLHCRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFSREQST 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium746g00013 628 MobiDBLite consensus disorder prediction 369 401 - -
Vium746g00013 628 ProSiteProfiles Protein kinase domain profile. 4 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium746g00013 628 FunFam Serine/threonine-protein kinase Nek2 91 281 - -
Vium746g00013 628 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 578 - -
Vium746g00013 628 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Vium746g00013 628 CDD STKc_Nek 3 265 - -
Vium746g00013 628 MobiDBLite consensus disorder prediction 366 401 - -
Vium746g00013 628 MobiDBLite consensus disorder prediction 538 556 - -
Vium746g00013 628 SUPERFAMILY Protein kinase-like (PK-like) 1 266 IPR011009 -
Vium746g00013 628 Gene3D Transferase(Phosphotransferase) domain 1 91 277 - -
Vium746g00013 628 Pfam Protein kinase domain 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium746g00013 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vium746g00013 628 ProSitePatterns Protein kinases ATP-binding region signature. 10 40 IPR017441 GO:0005524
Vium746g00013 628 SMART serkin_6 4 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium746g00013 628 MobiDBLite consensus disorder prediction 532 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium746g00013 Vium-Chr746 92928 99950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium746g00013 10 302 MAP Kinase Kinase Kinase AT1G53570 29.206 1.13e-33 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vium746g00013 Pkinase 1.8e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium746g00013 K08857 - gmx:100796019 1124.38