Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium746g00011 ATGGGAAAAGCCAGCAAATGGATCAGAAACTTCCTTCTGGGGAAAAAGGATGAGAAAATCAAGAAGATCGATGCATTATGCTCTGAGGATATTAAGAGTTCTAACACGGGGAGTCTGATCGTGAGTCCCAAAGTGAAGCGCAGATGGAGCTTTGGAAAACTAACAGGTGGAAGAATAACAAGCAAGATAGTAGGGCATAAATTTTCCAGGTCTTTTGACTCTGGTGAGTCTGCAAAACTGCAAATACAAGCCTTGTTGGAAACAAAGGCTTCAAGGCGTCTTCCAACACCACTGCCAAGAACTTACAAAGATAAAAACAAAGCTGCTACAAAGATTCAGGCTGGTTTTCGCTCATATTTGGCAAGGAGAGCATTGCATGCTTTAAGGGGATTAGTAAAGTTACAAGCACTAGTGAGGGGTCACCTTGTGAGGAAACAAACAACTGCTACCCTGCGTGGCATGCATGCGCTGATGGCCATACAAGTTAGAGCGCGAATTCACAGAATTCAAATGGCAGAGGACGTAAACCTCCTTGGAAAACAGCCTCCACAACATAGAGAAGTTGCACACTTCAGAGACCTAGTAACAGAAGAAAATAAAGATTCAAAGGATATGAGTGTGGAAGAAATGTTGGAGGCTTTGAGAAGCAGAAGTGGCCCTCTAGATGGTTCATATGTTAAGGCGGCCAGAGAACGTGATTTCATGACAGTCTATTCCAAGCATGTGCCAGTTGTTTCCAAACGAAAACATCAATACAAGAATACTCAAATCGTAGAGCCCAACAGCCCAGAAAACTTCCGGGTCATGTCTGAATTTAACACAACGGCAATGGCCGCCTTATCGACTTCTCAGCGTCACTTAGTGCCTCACCGCCAATCACTGTCACCAAATTACATGAACAAGACAGAATCTTCCAGGGCTAAAGCAAGGTCGCAGAGTGAACCGAGACAACGACCCAAAAGGGGAATGAGGAACAAAGGGAAGTCTGTGGAATCCCCATTGAATGGTCCAAGACAAAATCTGTTCTCAAACTCATTACGTTTCGATCATGGAAGCCTGGATCTTTGGTCTATCAATCTTCATGGGGACAGGAAGCGCGATTCCTTTGGCAGCAGCTCGGTCACTACTGATTCCTATTATTGA 1143 0.4444 MGKASKWIRNFLLGKKDEKIKKIDALCSEDIKSSNTGSLIVSPKVKRRWSFGKLTGGRITSKIVGHKFSRSFDSGESAKLQIQALLETKASRRLPTPLPRTYKDKNKAATKIQAGFRSYLARRALHALRGLVKLQALVRGHLVRKQTTATLRGMHALMAIQVRARIHRIQMAEDVNLLGKQPPQHREVAHFRDLVTEENKDSKDMSVEEMLEALRSRSGPLDGSYVKAARERDFMTVYSKHVPVVSKRKHQYKNTQIVEPNSPENFRVMSEFNTTAMAALSTSQRHLVPHRQSLSPNYMNKTESSRAKARSQSEPRQRPKRGMRNKGKSVESPLNGPRQNLFSNSLRFDHGSLDLWSINLHGDRKRDSFGSSSVTTDSYY 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium746g00011 380 ProSiteProfiles IQ motif profile. 105 133 IPR000048 GO:0005515
Vium746g00011 380 SMART iq_5 104 126 IPR000048 GO:0005515
Vium746g00011 380 SMART iq_5 127 148 IPR000048 GO:0005515
Vium746g00011 380 MobiDBLite consensus disorder prediction 307 327 - -
Vium746g00011 380 Pfam Protein of unknown function (DUF4005) 262 326 IPR025064 -
Vium746g00011 380 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 147 IPR027417 -
Vium746g00011 380 Pfam IQ calmodulin-binding motif 107 125 IPR000048 GO:0005515
Vium746g00011 380 Pfam IQ calmodulin-binding motif 132 146 IPR000048 GO:0005515
Vium746g00011 380 PANTHER IQ-DOMAIN 5-RELATED 1 331 - -
Vium746g00011 380 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
Vium746g00011 380 MobiDBLite consensus disorder prediction 281 306 - -
Vium746g00011 380 Gene3D - 104 159 - -
Vium746g00011 380 MobiDBLite consensus disorder prediction 281 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium746g00011 Vium-Chr746 91828 93402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium746g00011 1 357 IQD Protein Family AT4G14750 32.787 1.02e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium746g00011 - - var:108318790 712.99