Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium746g00009 ATGGAGAGTGCGAGTGCGGGGCTATCTTGTGGCCATAAAATTCCATGTGAGTTCTTCAAAGTTTTTCTTACAAACAGAGGTTCTACCCAGTTGCAAATACCAAGATCTTTCACTAAGTTTTTCACTGGAATCCCACCATGTAAGGTCATTCTTGTAGAACACGATGGAAAACATTGGGATGTTAAGGTGGAAAAAATCGAAGGTCGTTTGGTTTTTAAAAGTGGGTGGCAGGAATTTTCCAAGGAGAAAAATTTAGAAGATTGCGACTTTTTGGTTTTTGAGTATGATGGTAAAACTACTTTTAATGTGAAGATATTTGGGAAAACTGGGTGCAGGAAAGTGGCTGCACCTCCAAAAGTTGTTCCCATTGTGGATTTGGAAGAAGATTCTGATGAGCATAGTCATGAAATCCAGAACAATGGTGTACGGAAACGTCCACTCCCAAGTCCCAAAACAAATGTGAAATCAGAAGGTGCATGTCCATTCAAAGAAGCTCAGCGCAAATCAAAAAGAATGAAGGAAGGAAAAGATAAAATGAATGACGAGAAACCTGCGCTTACAAAGCTTGTTCCATTGGAGAATGCTCATTTTCAAATATGTTTTGATACTCCATATAAACTAAAAAGAGTGGAATTTCCTAGAAAAATGTTTAAAATGAATATGAAGCTGCTTCGGTATATAACTCTGAGGGATGAGAATGGCAAGTCATGGCTGGTGATGATCAATTCCTCATCGAATTATGATCGTAGTTTTTTGGGAAGTGGATGGATGGCTTTCAAGGAGAGTAAAAACATTCAAGTAGGGTCTCGATGTGATTTTCAGTTTGTTGTTGACAAAGCAAATGTGGCCAGAGAACTGCATGTGCGCGTGCTTTCGAAGATAAAGAAGAAATAG 894 0.3881 MESASAGLSCGHKIPCEFFKVFLTNRGSTQLQIPRSFTKFFTGIPPCKVILVEHDGKHWDVKVEKIEGRLVFKSGWQEFSKEKNLEDCDFLVFEYDGKTTFNVKIFGKTGCRKVAAPPKVVPIVDLEEDSDEHSHEIQNNGVRKRPLPSPKTNVKSEGACPFKEAQRKSKRMKEGKDKMNDEKPALTKLVPLENAHFQICFDTPYKLKRVEFPRKMFKMNMKLLRYITLRDENGKSWLVMINSSSNYDRSFLGSGWMAFKESKNIQVGSRCDFQFVVDKANVARELHVRVLSKIKKK 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium746g00009 297 CDD B3_DNA 205 292 IPR003340 GO:0003677
Vium746g00009 297 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Vium746g00009 297 ProSiteProfiles B3 DNA-binding domain profile. 227 294 IPR003340 GO:0003677
Vium746g00009 297 Pfam B3 DNA binding domain 18 108 IPR003340 GO:0003677
Vium746g00009 297 Pfam B3 DNA binding domain 207 292 IPR003340 GO:0003677
Vium746g00009 297 SMART B3_2 197 294 IPR003340 GO:0003677
Vium746g00009 297 SMART B3_2 18 109 IPR003340 GO:0003677
Vium746g00009 297 Coils Coil 162 182 - -
Vium746g00009 297 SUPERFAMILY DNA-binding pseudobarrel domain 18 111 IPR015300 -
Vium746g00009 297 PANTHER B3 DOMAIN-CONTAINING 16 279 - -
Vium746g00009 297 Gene3D - 13 111 IPR015300 -
Vium746g00009 297 Gene3D - 190 293 IPR015300 -
Vium746g00009 297 CDD B3_DNA 18 106 IPR003340 GO:0003677
Vium746g00009 297 MobiDBLite consensus disorder prediction 128 157 - -
Vium746g00009 297 SUPERFAMILY DNA-binding pseudobarrel domain 199 278 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium746g00009 Vium-Chr746 77559 79445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium746g00009 17 292 B3 DNA Binding Superfamily AT5G66980 28.939 1.22e-23 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium746g00009 B3 1.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium746g00009 - - var:108345771 550.821