Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium746g00002 ATGGAGTTTCCTCCGAACCTTTTGCCAGACGAAGCGAGCCCAGAATGGTTAAACAAAGGAGACAATGCGTGGCAGTTAATGGCAGCGACGGTGGTGGGTCTACAAAGCATTCCAGGGCTGGTTATTCTCTACGGAAGCCTCGTCAAAAAAACATGGGCCATTAACTCCGCTTTCATGGCCTTCTACGCCTTCGCGGCGGTTCTTCTCTGCTGGGTTGCGTGGGGTTTCCGCATGTCATTCGGTGAGAAAATGCTGTTCTTCTTGGGGAAACCAGGGGTGGCGCTGGACCAGGAGTTTCTTCTGGGGAAAGCGTTTCTGGGGCTCTTTCCCACCGCTACCATGGTGGTTTTTCAGGGCGTGTTCGCGGCGATTACTTTGATCCTCATAGCTGGGGCGTTGCTCGGGAGAATGAACATCCTTGCGTGGATGCTGTTTGTTCCTCTTTGGGTTACTTTTTCGTACACGGTCACTGCGTTTAGCATCTGGTGCCCCGAAGGATGGTTGGCGAGGCTTGGAGTTATTGATTTCTCCGGTGGATATGTCATTCACCTCTCTGCCGGAGTTGCCGGTTATACTGCAGCTTATTGGGTGGGTCCAAGATGTGAGAAGGACAGAGAAAGGTTTCCATCAAACAACATGATTGTAGGGCTCGCCGGCGCCGGCCTGCTTTGGATGGGTTGGAGTGGGTTCAACGGTGGTGGTCCGTTCGTGGTGAGCACGGTGGCTTCTCTGGCCGTCCTTAACACACACGTGTGTGCCGCCGCTAGCATCATGGTGTGGGTTCTACTTGACACTTTATACTTTGGTAAACCCACCGTGTTTGGCGCCATACAAGGCATGATCACCGGCCTTGTTTGCATCACACCTGCTGCAGGAGTTGTGCAGGGGTGGGCAGCGATCTTGATGGGTTTGATCTCAGGAAGCGTTCCCTGGTACACAATGATGATCCTCCATAACAAGGTACCATTCTTGAAACAAATCGACGACCCCATGGCGGTTTTCCACACCCACGCCGTCGCCGGTGCTCTCGGAGGAATCCTCACCGGCCTCTTCGCCGTCCCTAAACTCTGCCGTCTCTTCTACATGGTCCCCGATTGGGAAAAATACATTGGCCTGGCCTATGGCCTCCAGAACGGTGCAACTGGAGCGGGTTTAAGACAAATGGGCATCCAAATCGGAGCCATAGTTTTCGTCATCATCTTCAACTTCGTTACTACAAGCTTGATTTGCTTGCTGGTGGGGGTCTTGGTACCTCTCAGACTTCACACCGATGCGCTGCAAATGGGTGACAAGGCAATGCATGGAGAAGAGGCTTTCGCTTTGAATAATGCTGACAATGCCAAGTTTGAGAATCTCAACCACAACAAAGTTTATGATACTCAAGACTTTTCCTTCGTTAGAGACCCAAAACCATTGACTCAACTTCAAATGGTATGA 1437 0.517 MEFPPNLLPDEASPEWLNKGDNAWQLMAATVVGLQSIPGLVILYGSLVKKTWAINSAFMAFYAFAAVLLCWVAWGFRMSFGEKMLFFLGKPGVALDQEFLLGKAFLGLFPTATMVVFQGVFAAITLILIAGALLGRMNILAWMLFVPLWVTFSYTVTAFSIWCPEGWLARLGVIDFSGGYVIHLSAGVAGYTAAYWVGPRCEKDRERFPSNNMIVGLAGAGLLWMGWSGFNGGGPFVVSTVASLAVLNTHVCAAASIMVWVLLDTLYFGKPTVFGAIQGMITGLVCITPAAGVVQGWAAILMGLISGSVPWYTMMILHNKVPFLKQIDDPMAVFHTHAVAGALGGILTGLFAVPKLCRLFYMVPDWEKYIGLAYGLQNGATGAGLRQMGIQIGAIVFVIIFNFVTTSLICLLVGVLVPLRLHTDALQMGDKAMHGEEAFALNNADNAKFENLNHNKVYDTQDFSFVRDPKPLTQLQMV 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium746g00002 478 PRINTS Rhesus blood group protein signature 300 318 IPR002229 GO:0005886
Vium746g00002 478 PRINTS Rhesus blood group protein signature 245 267 IPR002229 GO:0005886
Vium746g00002 478 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005886
Vium746g00002 478 PRINTS Rhesus blood group protein signature 214 232 IPR002229 GO:0005886
Vium746g00002 478 ProSitePatterns Sodium:solute symporter family signature 2. 265 285 IPR018212 -
Vium746g00002 478 FunFam Ammonium transporter 6 442 - -
Vium746g00002 478 SUPERFAMILY Ammonium transporter 16 421 - -
Vium746g00002 478 NCBIfam ammonium transporter 21 438 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vium746g00002 478 Pfam Ammonium Transporter Family 23 438 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vium746g00002 478 PANTHER AMMONIUM TRANSPORTER MEP2 6 447 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vium746g00002 478 Gene3D Ammonium transporter AmtB like domains 8 458 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium746g00002 Vium-Chr746 6004 7642 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium746g00002 112 462 Inorganic Solute Cotransporters AT2G38290 55.271 9.65e-126 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium746g00002 K03320 - gmx:100782944 868.996