Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7467g00002 ATGGCTCAAAACCAAGCATCTTCTTCTACTTCTATTGTGTCAAAATACCGTTACGATGTTTTTCTTAGTTTTTGTGGAGATGATACCCGTTTTGGTTTCACTGGTAATCTGTACAGTGCTTTGAGTGAAAGGGGAATCTTGACCTTCATCGATGATGAAGCTCTCAGAAAGGGAGAAGAGATCACACCTTCTCTTCGCAAGGCAATCCAAGAATCCAGGATATCCATCATTGTTTTCTCCCAAAACTATGCTTTCTCAACATTTTGTTTGGACGAACTTCTCCATATCATTGAGTGCCGAACAAAACAGAACATGCTGATTTTTCCAGTGTTTTATGACGTAGAGCCATCACAAGTGCGAAATCAAACAGGGAGTTACCAAGAAGCATTTGCAAAGCTTGGTGAAAGATTCAAAGATGACATTCAGAAGCTTCAACAATGGAGGCGGGCTTTGTATGATGCTGCTAATTTGTCTGGTTTGCATTTCAAATCTGGTGAAAAGTATGAGTCTAATATAGTGAAAAAGATCATAAAAGAGATCTCCGATAGTTTTAAGCGGTCTCCCTTACATATTGCTGAGTATCCTGTTGGTTTGAAAGATCGGATGCAACAGATACAAGAACTCATGGGTGGTGAGTTTGATAAGAAAGTGACCATGCTTGGGATTCATGGAATGGGAGGAATAGGAAAATCAACTCTTGCACGTGCGATGTACAACTTGATGGAAGATCAATTTGAAGCTTCGCAATTTCTTGCTAATGTCAGGGAAAAAGGTCTGGTGCATATCCAAGAGACAATGCTGTCTGAGTTGGTGGGGGAAAGAAATATCAAGTTAGGAGATGTGCATCGAGGAATTCCAATACTACAACACAGACTTTGTGGGAAAAAAGTCCTCCTTGTGCTTGATGATATTAGCAAAAAAGAACAATTGCAAGCAACTGTTGGAGGACTTGATTGGTTTGGCCCTGGTAGCATCGTCATCATAACAACAAGGGATAAGCATTTGTTAGATGTTCATGGAGTTCAAAAACAGTACATGGTTGGTGAAATTAACCATATGGAAGCCCTTGAATTGTATAAGTGGAATGCTTTCAAGAACAAAGAAGTTGATCCATGTTACAAGGAAGTCATAAAGCGTGCAGTGTGGTATGCCGATGGCCTTCCATTGGCTTTGGAAACGATAGGCTCGCACTTATCAGGAAAGAAAGGGAAGAAAACCTTGATCAATGCCTTTATAGAGATTATAACATTTTCTGTCACTTGGCAAGAAAAAGTTTAG 1278 0.3991 MAQNQASSSTSIVSKYRYDVFLSFCGDDTRFGFTGNLYSALSERGILTFIDDEALRKGEEITPSLRKAIQESRISIIVFSQNYAFSTFCLDELLHIIECRTKQNMLIFPVFYDVEPSQVRNQTGSYQEAFAKLGERFKDDIQKLQQWRRALYDAANLSGLHFKSGEKYESNIVKKIIKEISDSFKRSPLHIAEYPVGLKDRMQQIQELMGGEFDKKVTMLGIHGMGGIGKSTLARAMYNLMEDQFEASQFLANVREKGLVHIQETMLSELVGERNIKLGDVHRGIPILQHRLCGKKVLLVLDDISKKEQLQATVGGLDWFGPGSIVIITTRDKHLLDVHGVQKQYMVGEINHMEALELYKWNAFKNKEVDPCYKEVIKRAVWYADGLPLALETIGSHLSGKKGKKTLINAFIEIITFSVTWQEKV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7467g00002 425 Gene3D - 350 414 IPR042197 -
Vium7467g00002 425 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
Vium7467g00002 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 408 IPR027417 -
Vium7467g00002 425 Gene3D - 163 346 IPR027417 -
Vium7467g00002 425 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 404 IPR044974 GO:0006952
Vium7467g00002 425 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Vium7467g00002 425 Gene3D - 1 154 IPR035897 -
Vium7467g00002 425 Pfam NB-ARC domain 202 404 IPR002182 GO:0043531
Vium7467g00002 425 PRINTS Disease resistance protein signature 219 234 - -
Vium7467g00002 425 PRINTS Disease resistance protein signature 384 398 - -
Vium7467g00002 425 PRINTS Disease resistance protein signature 291 305 - -
Vium7467g00002 425 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Vium7467g00002 425 SMART till_3 17 157 IPR000157 GO:0007165
Vium7467g00002 425 Pfam TIR domain 18 183 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7467g00002 Vium-Chr7467 16330 24879 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7467g00002 196 414 WRKY Transcription Factor Family AT5G45050 33.482 3.34e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7467g00002 - - vum:124829269 794.653