Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7461g00001 ATGGAGGCACCATCTCCAACCAAACCCATTGACCCAACAAAGCCTTCCATCACCACCCTCAGTGTGGAGGCCAGCCAGGCTGAGCCGAGCCCACTCCGAAAAATGTTTGCTGTGGCGTCCATAGCCGCGGGCATACAGTTCGGGTGGGCTCTTCAGCTTTCTCTGCTCACCCCTTACGTTCAGCTCTTAGGAGTTCCACACGCCGCAGCCTCCTTCATCTGGCTCTGCGGTCCCATATCCGGACTTGTGGTGCAGCCCATTGTGGGGTACTACAGCGACAAAAGCACTTCTCGCTTCGGTCGCAGACGCCCCTTTATTCTCGGAGGTGCAGTGGCTGTCGCCATAGCTGTATTTCTTATCGGTTATGCAGCCGATATAGGGTACTCAGCTGGCGACGACATAACCAAAAAAACCCGTCCTCGGGCCGTTGGGGTGTTCGTCATAGGATTTTGGATCCTAGATGTTGCAAACAACATGTTACAAGGTCCTTGCCGTGCCTTTCTGGCTGACTTAGCGGCTGGGGACCAGAGAAAAACCAGAATAGCAAATGGGTTTTTCTCGTTCTTCATGGCCGTCGGCAACGTGTTGGGATACGCAGCGGGGTCTTATAGTTCTCTGCACAAGATTTTTCCCTTCACGCAGACCAAGGCGTGCGATGTTTTCTGCGCCAATCTGAAAAGCTGTTTCTTTTTCTCGATCTTGTTGCTGCTGTTCTTGGCCACGGTAGCTCTCATTTACGTAAAGGACAAGCCCGTACCGCCACGGGCGGTGCAAGAGGACGTGCAGCCCTCGTGTTTCTTTCAGCTCTTCGGGGCGTTGAAGGAGCTGAAAAGACCCATGTGGATGCTCATGTTGGTCACAGCTATCAACTGGGTCGGGTGGTTCCCCTACTTCCTGTTCGACACTGACTGGATGGGTCGCGAGGTGTACGGCGGAACGGCTGGAGAGGACGCGTACGCGAAGGGGGTGCGCGTGGGGTCTCTGGGACTCATGGTAAACGCCGTCGTTTTGGGGTTCATGTCGCTGGCGGTTGAACCGTTGGGGCGCATGGTTGGGGGAGTGAAGAGGCTGTGGGGCATCGTGAACTTCATTCTCGCGATTGGGTTCGGGATGACCATCGTCATAACCAAGGTGGCGGAGCACGAGCGCCACATGAACCCCGCCGCAGTGGGCCACCCCTCCACCGGCGTCACAGTTGGGTCCATGGTTTTCTTCGCCGTTCTCGGAGTACCCCTTGCGGTAACGTTTTCTCTCTGTTCTCGACGTGTTTTAAACGACTGCGTTTGGTTTACTGATTTTGGGTTACAAATTTACAAACTTTAA 1323 0.5472 MEAPSPTKPIDPTKPSITTLSVEASQAEPSPLRKMFAVASIAAGIQFGWALQLSLLTPYVQLLGVPHAAASFIWLCGPISGLVVQPIVGYYSDKSTSRFGRRRPFILGGAVAVAIAVFLIGYAADIGYSAGDDITKKTRPRAVGVFVIGFWILDVANNMLQGPCRAFLADLAAGDQRKTRIANGFFSFFMAVGNVLGYAAGSYSSLHKIFPFTQTKACDVFCANLKSCFFFSILLLLFLATVALIYVKDKPVPPRAVQEDVQPSCFFQLFGALKELKRPMWMLMLVTAINWVGWFPYFLFDTDWMGREVYGGTAGEDAYAKGVRVGSLGLMVNAVVLGFMSLAVEPLGRMVGGVKRLWGIVNFILAIGFGMTIVITKVAEHERHMNPAAVGHPSTGVTVGSMVFFAVLGVPLAVTFSLCSRRVLNDCVWFTDFGLQIYKL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7461g00001 440 CDD MFS_SLC45_SUC 35 418 - -
Vium7461g00001 440 Pfam MFS/sugar transport protein 35 294 - -
Vium7461g00001 440 NCBIfam sucrose/proton symporter 31 418 IPR005989 GO:0005886|GO:0008515|GO:0015770
Vium7461g00001 440 PANTHER SUGAR TRANSPORTER 31 418 - -
Vium7461g00001 440 FunFam Sucrose transporter SUC2 33 254 - -
Vium7461g00001 440 SUPERFAMILY MFS general substrate transporter 33 421 IPR036259 -
Vium7461g00001 440 Gene3D MFS general substrate transporter like domains 33 255 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7461g00001 Vium-Chr7461 27660 29167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7461g00001 11 417 Sucrose Transporter Gene Family AT1G71880 61.995 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7461g00001 K15378 - gmx:100786411 744.962