Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7460g00009 ATGTGGGACAAACCCAGGCCAGAATCATCCATTAAGGACCAGGTATTTGCTTCCAACTTCTCGAGTGTTTCAGAAAAACAGCAGTTTTACCGTGACCTGGCTTCAGCTGCTGAATCAGGATGGGATTTCAGCACTAGATGGATGAGAAACCCGCCTAATTTCACAACATTGGCTACAACTTCCGTAATACCTGTTGATTTAAATGCATTTATACTCGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTGTTGGAGATAATGGCACTGCTGAACGGTTCCTGGAAAATGCTGATCTTAGAAAGAAGGCAATGGACTCTGTTTTCTGGAATGCAAACATGAAACAATGGCTTGACTACTGGCTCGAAAATACATGTGAGGAGGTTCATGTTTGGAAAAACGGGCGCCAGAATAAAAATGTATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAACCATTTTATTCAGACACTTCACTTGTGGCTAGTGTCGTTGAAAGTCTCAAAACTTCCAACCTTGTCCGTGCCGCTGGAGTTGCAACTTCTTTGACTGATTCAGGACAACAGTGGGACTTTCCAAATGGTTGGGCGCCGCTTCAACACATGCTAGTGGAAGGCCTTCTAAAATCTGGGTCGCAAGAAGCAAGGTCATTGGCTGAAGAAATTGCCACCAGATGGGTCACAAGCAATTATATCGTTTACAAGAAAACGGGCTTAATGCATGAAAAACTTGACGTTGAGCATTGTGGAGAATTTGGAGGTGGAGGCGAATACGTGCCCCAGACTGGTTTTGGGTGGTCAAATGGTGTTGTGTTGGCATTCTTGGAGGAGTTTGGATGGCCTGAAGATCGGAACATAGAATGCTGA 867 0.4383 MWDKPRPESSIKDQVFASNFSSVSEKQQFYRDLASAAESGWDFSTRWMRNPPNFTTLATTSVIPVDLNAFILGMELNIAFFAKVVGDNGTAERFLENADLRKKAMDSVFWNANMKQWLDYWLENTCEEVHVWKNGRQNKNVFASNFVPLWMKPFYSDTSLVASVVESLKTSNLVRAAGVATSLTDSGQQWDFPNGWAPLQHMLVEGLLKSGSQEARSLAEEIATRWVTSNYIVYKKTGLMHEKLDVEHCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDRNIEC 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7460g00009 288 SUPERFAMILY Six-hairpin glycosidases 2 281 IPR008928 GO:0005975
Vium7460g00009 288 ProSitePatterns Trehalase signature 2. 189 198 IPR018232 GO:0004555|GO:0005991
Vium7460g00009 288 Gene3D - 1 286 IPR012341 GO:0005975
Vium7460g00009 288 PRINTS Glycosyl hydrolase family 37 signature 182 198 IPR001661 GO:0004555|GO:0005991
Vium7460g00009 288 PRINTS Glycosyl hydrolase family 37 signature 105 121 IPR001661 GO:0004555|GO:0005991
Vium7460g00009 288 PRINTS Glycosyl hydrolase family 37 signature 30 47 IPR001661 GO:0004555|GO:0005991
Vium7460g00009 288 PRINTS Glycosyl hydrolase family 37 signature 262 275 IPR001661 GO:0004555|GO:0005991
Vium7460g00009 288 PRINTS Glycosyl hydrolase family 37 signature 62 79 IPR001661 GO:0004555|GO:0005991
Vium7460g00009 288 PANTHER TREHALASE 1 286 IPR001661 GO:0004555|GO:0005991
Vium7460g00009 288 Pfam Trehalase 2 279 IPR001661 GO:0004555|GO:0005991
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7460g00009 Vium-Chr7460 106952 109768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7460g00009 1 288 Trehalose Biosynthesis Gene Families AT4G24040 61.806 1.13e-122 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7460g00009 K01194 - vum:124845219 600.897