Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7460g00005 ATGTTGGAAGGCGGTGCGAAATTCCCGGGAATAATAGATCTCAACAAAAATAATAACAATTACTATGATTTCTCTCAGGGCTTCTACCATAAGCTTGGGGAGGGTACCAATATGTCAATTGACAGTGTTGGGAGCTTACAGACAAGTAATGGTGGCGGATCTGTTGCGATGTCAATTGATAATAGCAGTGTTGGGTCCAATGATTCCCATACTCGCATGTTGGACCACCAAGGGTTGCGGAGGCGTGCCAATGACAACTACTCTGTTGCACATAGTGCCAATCGTCGTGGAAGAGTTACCCATGCTTTGAGCGATGATGCTTTAGCTCAAGCTCTAATGGACAACAGCTCTCCTACTGAAGGGCTTGATAATTTTGATGAGTGGACAATTGATTTGAGGAAACTCAATATGGGTGAGCCTTTTGCACAAGGAGCCTTTGGGAAACTCTACAGAGGTACTTACAATGGTGAAGATGTTGCTATTAAAATATTGGAGAGGCCGGAAAATGATCCAGCAAAGGCTCAATTGATGGAACAGCAATTCCAGCAGGAGGTCATGATGTTGGCTACTCTAAAGCATCCTAACATAGTTCGATTCATTGGCGCATGCCGTAAGCCAATGGTGTGGTGCATTGTGACCGAGTATGCTAAGGGTGGTTCAGTTCGACAATTTTTAATGAAGCGGCAAAAGCGATCAGTTCCCCTCAAATTGGCTGTCAAGCAAGCTTTGGATGTTGCAAAGGGGATGGCTTATGTTCATGGCCTTGGGTTGATCCACAGGGACTTGAAATCTGATAATCTTTTGATTTTTGGTGACAAGTCAATTAAAATTGCTGACTTTGGAGTTGCCAGAATTGAGGTTCAAACTGAAGGAATGACACCTGAGACTGGAACATACCGTTGGATGGCTCCGGAGATGATCCAGCACAGGCCATACACACAAAAGGTGGATGTATATAGCTTCGGAATTGTTCTATGGGAACTCATCACCGGTATGCTTCCATTTCAGAACATGACAGCAGTGCAGGCAGCATTTGCAGTTGTCAACAAAAATGTTCGTCCGATCATACCCAATGATTGCCTACCTGTTCTCCGTGACATCATGACAAGATGCTGGGATCCCAACCCTGATGTGAGGCCACCATTTGCTGAAGTTGTTGGAATGCTCGAGAATGCAGAGACTGAGATCTTGACAACAGTTCGGAAGGCCCGGTTCAGGTGTTGCATCACTCAACCAATGACTGCTGACTGA 1251 0.4516 MLEGGAKFPGIIDLNKNNNNYYDFSQGFYHKLGEGTNMSIDSVGSLQTSNGGGSVAMSIDNSSVGSNDSHTRMLDHQGLRRRANDNYSVAHSANRRGRVTHALSDDALAQALMDNSSPTEGLDNFDEWTIDLRKLNMGEPFAQGAFGKLYRGTYNGEDVAIKILERPENDPAKAQLMEQQFQQEVMMLATLKHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQFLMKRQKRSVPLKLAVKQALDVAKGMAYVHGLGLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKNVRPIIPNDCLPVLRDIMTRCWDPNPDVRPPFAEVVGMLENAETEILTTVRKARFRCCITQPMTAD 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7460g00005 416 ProSiteProfiles Protein kinase domain profile. 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7460g00005 416 CDD STKc_MAP3K-like 142 389 - -
Vium7460g00005 416 PANTHER SERINE-THREONINE PROTEIN KINASE 55 391 - -
Vium7460g00005 416 SUPERFAMILY Protein kinase-like (PK-like) 119 389 IPR011009 -
Vium7460g00005 416 Gene3D Transferase(Phosphotransferase) domain 1 218 411 - -
Vium7460g00005 416 SMART serkin_6 135 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7460g00005 416 PRINTS Tyrosine kinase catalytic domain signature 316 338 IPR001245 GO:0004672|GO:0006468
Vium7460g00005 416 PRINTS Tyrosine kinase catalytic domain signature 360 382 IPR001245 GO:0004672|GO:0006468
Vium7460g00005 416 PRINTS Tyrosine kinase catalytic domain signature 213 226 IPR001245 GO:0004672|GO:0006468
Vium7460g00005 416 PRINTS Tyrosine kinase catalytic domain signature 251 269 IPR001245 GO:0004672|GO:0006468
Vium7460g00005 416 PRINTS Tyrosine kinase catalytic domain signature 297 307 IPR001245 GO:0004672|GO:0006468
Vium7460g00005 416 FunFam Serine/threonine-protein kinase isoform 1 125 217 - -
Vium7460g00005 416 Gene3D Phosphorylase Kinase; domain 1 124 217 - -
Vium7460g00005 416 Pfam Protein tyrosine and serine/threonine kinase 136 388 IPR001245 GO:0004672|GO:0006468
Vium7460g00005 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Vium7460g00005 416 FunFam serine/threonine-protein kinase HT1 218 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7460g00005 Vium-Chr7460 53301 59387 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7460g00005 24 416 MAP Kinase Kinase Kinase AT2G24360 79.644 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium7460g00005 PK_Tyr_Ser-Thr 5.6e-66 CL0016