Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7460g00004 ATGTTGGAAGGCGGTGCGAAATTCCCGGGAATAATAGATCTCAACAAAAATAATAACAATTACTATGATTTCTCTCAGGGCTTCTACCATAAGCTTGGGGAGGGTACCAATATGTCAATTGACAGTGTTGGGAGCTTACAGACAAGTAATGGTGGCGGATCTGTTGCGATGTCAATTGATAATAGCAGTGTTGGGTCCAATGATTCCCATACTCGCATGTTGGACCACCAAGGGTTGCGGAGGCGTGCCAATGACAACTACTCTGTTGCACATAGTGCCAATCGTCGTGGAAGAGTTACCCATGCTTTGAGCGATGATGCTTTAGCTCAAGCTCTAATGGACAACAGCTCTCCTACTGAAGGGCTTGATAATTTTGATGAGTGGACAATTGATTTGAGGAAACTCAATATGGGTGAGCCTTTTGCACAAGGAGCCTTTGGGAAACTCTACAGAGGTACTTACAATGGTGAAGATGTTGCTATTAAAATATTGGAGAGGCCGGAAAATGATCCAGCAAAGGCTCAATTGATGGAACAGCAATTCCAGCAGGAGGTCATGATGTTGGCTACTCTAAAGCATCCTAACATAGTTCGATTCATTGGCGCATGCCGTAAGCCAATGGTGTGGTGCATTGTGACCGAGTATGCTAAGGGTGGTTCAGTTCGACAATTTTTAATGAAGCGGCAAAAGCGATCAGTTCCCCTCAAATTGGCTGTCAAGCAAGCTTTGGATGTTGCAAAGGGGATGGCTTATGTTCATGGCCTTGGGTTGATCCACAGGGACTTGAAATCTGATAATCTTTTGATTTTTGGTGACAAGTCAATTAAAATTGCTGACTTTGGAGTTGCCAGAATTGAGGTTCAAACTGAAGGAATGACACCTGAGACTGGAACATACCGTTGGATGGCTCCGGTTGTGGCACATGCATCTAGTTGCCTGGCTGGAATGCAATAA 954 0.4444 MLEGGAKFPGIIDLNKNNNNYYDFSQGFYHKLGEGTNMSIDSVGSLQTSNGGGSVAMSIDNSSVGSNDSHTRMLDHQGLRRRANDNYSVAHSANRRGRVTHALSDDALAQALMDNSSPTEGLDNFDEWTIDLRKLNMGEPFAQGAFGKLYRGTYNGEDVAIKILERPENDPAKAQLMEQQFQQEVMMLATLKHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQFLMKRQKRSVPLKLAVKQALDVAKGMAYVHGLGLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPVVAHASSCLAGMQ 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7460g00004 317 ProSiteProfiles Protein kinase domain profile. 135 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7460g00004 317 Gene3D Phosphorylase Kinase; domain 1 126 210 - -
Vium7460g00004 317 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 72 307 - -
Vium7460g00004 317 Gene3D Transferase(Phosphotransferase) domain 1 211 312 - -
Vium7460g00004 317 SMART serkin_6 135 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7460g00004 317 FunFam Serine/threonine-protein kinase isoform 1 125 217 - -
Vium7460g00004 317 SUPERFAMILY Protein kinase-like (PK-like) 123 308 IPR011009 -
Vium7460g00004 317 Pfam Protein tyrosine and serine/threonine kinase 136 307 IPR001245 GO:0004672|GO:0006468
Vium7460g00004 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7460g00004 Vium-Chr7460 53295 58877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7460g00004 17 304 MAP Kinase Kinase Kinase AT4G31170 75.517 5.89e-157 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium7460g00004 PK_Tyr_Ser-Thr 1.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7460g00004 - - gmx:100788536 608.216