Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7456g00011 ATGATGAGAGATGGTGGTGTGACATCATCATCTGCTTCCATGATGGAAGCTCCACCACCAGATGGAACAATAACAACAACAACAATGGATTTTGACTACATGGGTGAGCTTTTCTTAGATGGGTGCTGGTTGGAAGCCTCTGTTGATGGATCTGACTTCTTGCCGCAAAGTCCTTCCTTTTCCAATCCCCTCTTTGACCCTTCATTCTCCTGGCCAGCCTTGGAGACTAACCACGACGAATCCCAGGGTGCTGCTTTTGGAACACAACAAGAAGGCCACAACAACAACAACATGGTTAATGTTGTTGTTGGTGGTGGTCAAGAGTTGCAGCCTGAAACTATTACAACTGAAGGAGCTTCCGAAGGGGTGAGAAGATGGAGGTTTGCAGCCACACCTGCTCCTGCACCTGGACCTTCCATAATGGAGAAGCTAATAAGGGCTCTCATGTGGATCAAAGACTACAATAGGAACAAAAACATGCTTATACAGATATGGGTGCCGGTTCATAGAGGGGGTAGACCGATTCTCGCAGCTAATGATATTCTGTTCTCACTCGATTCAAGGTCTGTAAACCTTGCAAAGTACCGCGAAATCTCTGTGAGGTACGAGTTTTCTGCGGAGGAAGGTGAGGTCAAGGAGTTGGTGCCAGCAGAGAAAGGTGGCTCCAAGGAATTGTTACCAGGATTACCTGGTAGAGTGTTCAGAGACAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAGGAGTGACGAGTATCCGCGAGTTGACCATGCTCAAGAGTATGATGTGAGTGGGTCACTAGCAGTACCAATCTTTGAGCAAGGCAGCAAGATGTGCTTGGGAGTTATTGAGGTTGTGATGACTACTCAGCAGATCAACTATACTCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTTGATCTTAGAAGCTCAAAACAATTAAGTATTCATAATGTGAAGGCATGCAACAGGTCCTACGAAGCTGTACTACCTGAGATTCAACTGGTGTTGAGATCTGCATGTGAAATGCATAGATTACCTTTAGCTCAAACTTGGATCCCATGTGTCCAACAAGGCAAAGAGGGATGCCGGCATTCAGAAGATAATTATCTACTTTGTATATCTCCTGTGGAGCAAGCTTGCTATGTTGGTGATCCCAAAATCAGGCCTTTTCACGAGTCTTGCACTGAACACCACTTGTTGAAGGGTGAAGGTGTTGCTGGGGGAGCTTTTGTCACCAACCAACCATGTTTCTCAGATGACATAACATCCTTAAGCAAGAAAGACTATCCACTGTCTCATCATGCAAGGTTGTTTGGATTGCGTGCTGCTGTTGCCATACGCCTTCGAAGCATCTTGAATGATACGGATGACTTTGTTTTAGAGTTCTTCTTGCCTGTAGAATGCAATGACAGTGAAGAGCAGAGAAAGATGCTCACATCATTGTCCATCATTATACAAAAGCTTTGTCACAGCTTGCGGGTTATAAGTGATAAGGAATTGGAGGAAGCTAACTTGTCAATTGATGAAATGATTTCCTCTGTAGAGGGTGGATTTGATAGGACTGTAATTTGTGAGGAACTTCAACATAAAGGGACGGTTGCCTCATTGGATACTGAAGAAAAAATAAGTGAAACAACTGGTAGAAAGTTCTCTGACCCAAGGCAGCAGCAAGAAAGTCCTATTTTAAAAGGAAACTTTGACTGTGTCAGGGAGTGTTCTACTTCTGTTCAGGGTAACTTATCAAGTGTGAGAATGAGTAAAATGGGAGAGAGAAGACGGGCCAAAGCAGAGAAAACTATCACTTTGCAAGTTCTTAGACAATATTTTGCAGGAAGCTTAAAAGATGCTGCAAAGAATATCGGTGTGTGTACTACAACCTTGAAAAGGATCTGCCGGCAACACGGGATAAAGCGTTGGCCCTCCCGAAAGATCAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTGATTGACTCGGTTCAAGGTGCCTCTGGGGCATTTCAAATCGATTCCTTCTATTCAAACTTCCCAGAACTAGCTTCTCCAAACTTATCAGGAACAAGCATGTTCTCAACTTTGAATCAAACTGATAATCCAAACTCAATAAGCACGCAGCCAGATCCTGGCTCATTGAGTCCAGAAGGCACATCAAAATCTCCCTCTTCCTCCTGCGGTCAGAGTTCCATTTCAAGCCATTCCTGCTCCAGCATGTCAGAGCTACAGCAGCAGCATCACACAACCAACATTGCAGGTAACAAAGATTCCACCATGGCCGGTGAAGATTCTGCAAATGTTGCGCTGAAGAGGATCAGAAGCGAAGCAGAGCTTAAAAGCCTGAATGAGGATAAAGCAAAGCTCTTATCAAGATCACTGAGCCAGGAAACACTTGGTGAGCACCCAAAAAACCAGTATGAAAGACCCTTATTGAAAACAAGTAGCAAGGTGGATGCACACAGAGTAAAAGTCACATATGGTGATGAAAAAGCTCGGTTTCGGATGCCCAAGAACTGGGGCTATGAAGATCTTGTGCAGGAAATTGGTAGGAGATTTAATGTGAGTGAAATGAGCAAATTTGATGTGAAATACTTGGATGATGACAGTGAGTGGGTACTACTCACTTGTGATGCTGACTTAGAGGAGTGCATTGATGTTTGTCGATCTTCTGAGAAGGCCACCATCAAACTAAGCCTACAAATTTCTAGTCATAGTTTGAGAAGTTCTTTAGAATTTAGATAA 2751 0.4387 MMRDGGVTSSSASMMEAPPPDGTITTTTMDFDYMGELFLDGCWLEASVDGSDFLPQSPSFSNPLFDPSFSWPALETNHDESQGAAFGTQQEGHNNNNMVNVVVGGGQELQPETITTEGASEGVRRWRFAATPAPAPGPSIMEKLIRALMWIKDYNRNKNMLIQIWVPVHRGGRPILAANDILFSLDSRSVNLAKYREISVRYEFSAEEGEVKELVPAEKGGSKELLPGLPGRVFRDKVPEWTPDVRFFRSDEYPRVDHAQEYDVSGSLAVPIFEQGSKMCLGVIEVVMTTQQINYTPELESVCKALEAVDLRSSKQLSIHNVKACNRSYEAVLPEIQLVLRSACEMHRLPLAQTWIPCVQQGKEGCRHSEDNYLLCISPVEQACYVGDPKIRPFHESCTEHHLLKGEGVAGGAFVTNQPCFSDDITSLSKKDYPLSHHARLFGLRAAVAIRLRSILNDTDDFVLEFFLPVECNDSEEQRKMLTSLSIIIQKLCHSLRVISDKELEEANLSIDEMISSVEGGFDRTVICEELQHKGTVASLDTEEKISETTGRKFSDPRQQQESPILKGNFDCVRECSTSVQGNLSSVRMSKMGERRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSNFPELASPNLSGTSMFSTLNQTDNPNSISTQPDPGSLSPEGTSKSPSSSCGQSSISSHSCSSMSELQQQHHTTNIAGNKDSTMAGEDSANVALKRIRSEAELKSLNEDKAKLLSRSLSQETLGEHPKNQYERPLLKTSSKVDAHRVKVTYGDEKARFRMPKNWGYEDLVQEIGRRFNVSEMSKFDVKYLDDDSEWVLLTCDADLEECIDVCRSSEKATIKLSLQISSHSLRSSLEFR 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7456g00011 916 Gene3D - 820 903 - -
Vium7456g00011 916 MobiDBLite consensus disorder prediction 1 22 - -
Vium7456g00011 916 ProSiteProfiles RWP-RK domain profile. 588 671 IPR003035 -
Vium7456g00011 916 MobiDBLite consensus disorder prediction 692 749 - -
Vium7456g00011 916 SMART PB1_new 822 905 IPR000270 GO:0005515
Vium7456g00011 916 Pfam RWP-RK domain 603 651 IPR003035 -
Vium7456g00011 916 PANTHER PROTEIN NLP8 115 912 IPR045012 GO:0003700
Vium7456g00011 916 Pfam PB1 domain 823 903 IPR000270 GO:0005515
Vium7456g00011 916 ProSiteProfiles PB1 domain profile. 822 905 IPR000270 GO:0005515
Vium7456g00011 916 Gene3D - 182 324 IPR029016 -
Vium7456g00011 916 SUPERFAMILY CAD & PB1 domains 821 906 - -
Vium7456g00011 916 Coils Coil 774 794 - -
Vium7456g00011 916 CDD PB1_NLP 823 903 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7456g00011 Vium-Chr7456 50656 55520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7456g00011 27 907 NLP Transcription Factor Family AT1G20640 47.709 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vium7456g00011 PB1 5e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7456g00011 - - gmx:100785135 1430.23