Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7456g00010 ATGATGAGAGATGGTGGTGTGACATCATCATCTGCTTCCATGATGGAAGCTCCACCACCAGATGGAACAATAACAACAACAACAATGGATTTTGACTACATGGGTGAGCTTTTCTTAGATGGGTGCTGGTTGGAAGCCTCTGTTGATGGATCTGACTTCTTGCCGCAAAGTCCTTCCTTTTCCAATCCCCTCTTTGACCCTTCATTCTCCTGGCCAGCCTTGGAGACTAACCACGACGAATCCCAGGGTGCTGCTTTTGGAACACAACAAGAAGGCCACAACAACAACAACATGGTTAATGTTGTTGTTGGTGGTGGTCAAGAGTTGCAGCCTGAAACTATTACAACTGAAGGAGCTTCCGAAGGGGTGAGAAGATGGAGGTTTGCAGCCACACCTGCTCCTGCACCTGGACCTTCCATAATGGAGAAGCTAATAAGGGCTCTCATGTGGATCAAAGACTACAATAGGAACAAAAACATGCTTATACAGATATGGGTGCCGGTTCATAGAGGGGGTAGACCGATTCTCGCAGCTAATGATATTCTGTTCTCACTCGATTCAAGGTCTGTAAACCTTGCAAAGTACCGCGAAATCTCTGTGAGGTACGAGTTTTCTGCGGAGGAAGGTGAGGTCAAGGAGTTGGTGCCAGCAGAGAAAGGTGGCTCCAAGGAATTGTTACCAGGATTACCTGGTAGAGTGTTCAGAGACAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAGGAGTGACGAGTATCCGCGAGTTGACCATGCTCAAGAGTATGATGTGAGTGGGTCACTAGCAGTACCAATCTTTGAGCAAGGCAGCAAGATGTGCTTGGGAGTTATTGAGGTTGTGATGACTACTCAGCAGATCAACTATACTCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCATGCAACAGGTCCTACGAAGCTGTACTACCTGAGATTCAACTGGTGTTGAGATCTGCATGTGAAATGCATAGATTACCTTTAGCTCAAACTTGGATCCCATGTGTCCAACAAGGCAAAGAGGGATGCCGGCATTCAGAAGATAATTATCTACTTTGTATATCTCCTGTGGAGCAAGCTTGCTATGTTGGTGATCCCAAAATCAGGCCTTTTCACGAGTCTTGCACTGAACACCACTTGTTGAAGGGTGAAGGTGTTGCTGGGGGAGCTTTTGTCACCAACCAACCATGTTTCTCAGATGACATAACATCCTTAAGCAAGAAAGACTATCCACTGTCTCATCATGCAAGGTTGTTTGGATTGCGTGCTGCTGTTGCCATACGCCTTCGAAGCATCTTGAATGATACGGATGACTTTGTTTTAGAGTTCTTCTTGCCTGTAGAATGCAATGACAGTGAAGAGCAGAGAAAGATGCTCACATCATTGTCCATCATTATACAAAAGCTTTGTCACAGCTTGCGGGTTATAAGTGATAAGGAATTGGAGGAAGCTAACTTGTCAATTGATGAAATGATTTCCTCTGTAGAGGGTGGATTTGATAGGACTGTAATTTGTGAGGAACTTCAACATAAAGGGACGGTTGCCTCATTGGATACTGAAGAAAAAATAAGTGAAACAACTGGTAGAAAGTTCTCTGACCCAAGGCAGCAGCAAGAAAGTCCTATTTTAAAAGGAAACTTTGACTGTGTCAGGGAGTGTTCTACTTCTGTTCAGGGTAACTTATCAAGTGTGAGAATGAGTAAAATGGGAGAGAGAAGACGGGCCAAAGCAGAGAAAACTATCACTTTGCAAGTTCTTAGACAATATTTTGCAGGAAGCTTAAAAGATGCTGCAAAGAATATCGGTGTGTGTACTACAACCTTGAAAAGGATCTGCCGGCAACACGGGATAAAGCGTTGGCCCTCCCGAAAGATCAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTGATTGACTCGGTTCAAGGTGCCTCTGGGGCATTTCAAATCGATTCCTTCTATTCAAACTTCCCAGAACTAGCTTCTCCAAACTTATCAGGAACAAGCATGTTCTCAACTTTGAATCAAACTGATAATCCAAACTCAATAAGCACGCAGCCAGATCCTGGCTCATTGAGTCCAGAAGGCACATCAAAATCTCCCTCTTCCTCCTGCGGTCAGAGTTCCATTTCAAGCCATTCCTGCTCCAGCATGTCAGAGCTACAGCAGCAGCATCACACAACCAACATTGCAGGTAACAAAGATTCCACCATGGCCGGTGAAGATTCTGCAAATGTTGCGCTGAAGAGGATCAGAAGCGAAGCAGAGCTTAAAAGCCTGAATGAGGATAAAGCAAAGCTCTTATCAAGATCACTGAGCCAGGAAACACTTGGTGAGCACCCAAAAAACCAGTATGAAAGACCCTTATTGAAAACAAGTAGCAAGGTGGATGCACACAGAGTAAAAGTCACATATGGTGATGAAAAAGCTCGGTTTCGGATGCCCAAGAACTGGGGCTATGAAGATCTTGTGCAGGAAATTGGTAGGAGATTTAATGTGAGTGAAATGAGCAAATTTGATGTGAAATACTTGGATGATGACAGTGAGTGGGTACTACTCACTTGTGATGCTGACTTAGAGGAGTGCATTGATGTTTGTCGATCTTCTGAGAAGGCCACCATCAAACTAAGCCTACAAATTTCTAGTCATAGTTTGAGAAGTTCTTTAGAATTTAGATAA 2703 0.441 MMRDGGVTSSSASMMEAPPPDGTITTTTMDFDYMGELFLDGCWLEASVDGSDFLPQSPSFSNPLFDPSFSWPALETNHDESQGAAFGTQQEGHNNNNMVNVVVGGGQELQPETITTEGASEGVRRWRFAATPAPAPGPSIMEKLIRALMWIKDYNRNKNMLIQIWVPVHRGGRPILAANDILFSLDSRSVNLAKYREISVRYEFSAEEGEVKELVPAEKGGSKELLPGLPGRVFRDKVPEWTPDVRFFRSDEYPRVDHAQEYDVSGSLAVPIFEQGSKMCLGVIEVVMTTQQINYTPELESVCKALEACNRSYEAVLPEIQLVLRSACEMHRLPLAQTWIPCVQQGKEGCRHSEDNYLLCISPVEQACYVGDPKIRPFHESCTEHHLLKGEGVAGGAFVTNQPCFSDDITSLSKKDYPLSHHARLFGLRAAVAIRLRSILNDTDDFVLEFFLPVECNDSEEQRKMLTSLSIIIQKLCHSLRVISDKELEEANLSIDEMISSVEGGFDRTVICEELQHKGTVASLDTEEKISETTGRKFSDPRQQQESPILKGNFDCVRECSTSVQGNLSSVRMSKMGERRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSNFPELASPNLSGTSMFSTLNQTDNPNSISTQPDPGSLSPEGTSKSPSSSCGQSSISSHSCSSMSELQQQHHTTNIAGNKDSTMAGEDSANVALKRIRSEAELKSLNEDKAKLLSRSLSQETLGEHPKNQYERPLLKTSSKVDAHRVKVTYGDEKARFRMPKNWGYEDLVQEIGRRFNVSEMSKFDVKYLDDDSEWVLLTCDADLEECIDVCRSSEKATIKLSLQISSHSLRSSLEFR 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7456g00010 900 Gene3D - 182 308 IPR029016 -
Vium7456g00010 900 Pfam PB1 domain 807 887 IPR000270 GO:0005515
Vium7456g00010 900 MobiDBLite consensus disorder prediction 1 22 - -
Vium7456g00010 900 SUPERFAMILY CAD & PB1 domains 805 890 - -
Vium7456g00010 900 MobiDBLite consensus disorder prediction 676 733 - -
Vium7456g00010 900 Pfam RWP-RK domain 587 635 IPR003035 -
Vium7456g00010 900 PANTHER PROTEIN NLP8 115 896 IPR045012 GO:0003700
Vium7456g00010 900 Gene3D - 804 887 - -
Vium7456g00010 900 ProSiteProfiles RWP-RK domain profile. 572 655 IPR003035 -
Vium7456g00010 900 ProSiteProfiles PB1 domain profile. 806 889 IPR000270 GO:0005515
Vium7456g00010 900 SMART PB1_new 806 889 IPR000270 GO:0005515
Vium7456g00010 900 Coils Coil 758 778 - -
Vium7456g00010 900 CDD PB1_NLP 807 887 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7456g00010 Vium-Chr7456 50655 55520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7456g00010 27 891 NLP Transcription Factor Family AT1G20640 47.039 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vium7456g00010 PB1 4.8e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7456g00010 - - gmx:100785135 1397.88