Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7456g00008 ATGATGAGAGATGGTGGTGTGACATCATCATCTGCTTCCATGATGGAAGCTCCACCACCAGATGGAACAATAACAACAACAACAATGGATTTTGACTACATGGGTGAGCTTTTCTTAGATGGGTGCTGGTTGGAAGCCTCTGTTGATGGATCTGACTTCTTGCCGCAAAGTCCTTCCTTTTCCAATCCCCTCTTTGACCCTTCATTCTCCTGGCCAGCCTTGGAGACTAACCACGACGAATCCCAGGGTGCTGCTTTTGGAACACAACAAGAAGGCCACAACAACAACAACATGGTTAATGTTGTTGTTGGTGGTGGTCAAGAGTTGCAGCCTGAAACTATTACAACTGAAGGAGCTTCCGAAGGGGTGAGAAGATGGAGGTTTGCAGCCACACCTGCTCCTGCACCTGGACCTTCCATAATGGAGAAGCTAATAAGGGCTCTCATGTGGATCAAAGACTACAATAGGAACAAAAACATGCTTATACAGATATGGGTGCCGGTTCATAGAGGGGGTAGACCGATTCTCGCAGCTAATGATATTCTGTTCTCACTCGATTCAAGGTCTGTAAACCTTGCAAAGTACCGCGAAATCTCTGTGAGGTACGAGTTTTCTGCGGAGGAAGGTGAGGTCAAGGAGTTGGTGCCAGCAGAGAAAGGTGGCTCCAAGGAATTGTTACCAGGATTACCTGGTAGAGTGTTCAGAGACAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAGGAGTGACGAGTATCCGCGAGTTGACCATGCTCAAGAGTATGATGTGAGTGGGTCACTAGCAGTACCAATCTTTGAGCAAGGCAGCAAGATGTGCTTGGGAGTTATTGAGGTTGTGATGACTACTCAGCAGATCAACTATACTCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTTGATCTTAGAAGCTCAAAACAATTAAGTATTCATAATGTGAAGGCATGCAACAGGTCCTACGAAGCTGTACTACCTGAGATTCAACTGGTGTTGAGATCTGCATGTGAAATGCATAGATTACCTTTAGCTCAAACTTGGATCCCATGTGTCCAACAAGGCAAAGAGGGATGCCGGCATTCAGAAGATAATTATCTACTTTGTATATCTCCTGTGGAGCAAGCTTGCTATGTTGGTGATCCCAAAATCAGGCCTTTTCACGAGTCTTGCACTGAACACCACTTGTTGAAGGGTGAAGGTGTTGCTGGGGGAGCTTTTGTCACCAACCAACCATGTTTCTCAGATGACATAACATCCTTAAGCAAGAAAGACTATCCACTGTCTCATCATGCAAGGTTGTTTGGATTGCGTGCTGCTGTTGCCATACGCCTTCGAAGCATCTTGAATGATACGGATGACTTTGTTTTAGAGTTCTTCTTGCCTGTAGAATGCAATGACAGTGAAGAGCAGAGAAAGATGCTCACATCATTGTCCATCATTATACAAAAGCTTTGTCACAGCTTGCGGGTTATAAGTGATAAGGAATTGGAGGAAGCTAACTTGTCAATTGATGAAATGATTTCCTCTGTAGAGGGTGGATTTGATAGGACTGTAATTTGTGAGGAACTTCAACATAAAGGGACGGTTGCCTCATTGGATACTGAAGAAAAAATAAGTGAAACAACTGGTAGAAAGTTCTCTGACCCAAGGCAGCAGCAAGAAAGTCCTATTTTAAAAGGAAACTTTGACTGTGTCAGGGAGTGTTCTACTTCTGTTCAGGGTAACTTATCAAGTGTGAGAATGAGTAAAATGGGAGAGAGAAGACGGGCCAAAGCAGAGAAAACTATCACTTTGCAAGTTCTTAGACAATATTTTGCAGGAAGCTTAAAAGATGCTGCAAAGAATATCGGTGTGTGTACTACAACCTTGAAAAGGATCTGCCGGCAACACGGGATAAAGCGTTGGCCCTCCCGAAAGATCAAAAAGGAACAAGCATGTTCTCAACTTTGA 1974 0.4417 MMRDGGVTSSSASMMEAPPPDGTITTTTMDFDYMGELFLDGCWLEASVDGSDFLPQSPSFSNPLFDPSFSWPALETNHDESQGAAFGTQQEGHNNNNMVNVVVGGGQELQPETITTEGASEGVRRWRFAATPAPAPGPSIMEKLIRALMWIKDYNRNKNMLIQIWVPVHRGGRPILAANDILFSLDSRSVNLAKYREISVRYEFSAEEGEVKELVPAEKGGSKELLPGLPGRVFRDKVPEWTPDVRFFRSDEYPRVDHAQEYDVSGSLAVPIFEQGSKMCLGVIEVVMTTQQINYTPELESVCKALEAVDLRSSKQLSIHNVKACNRSYEAVLPEIQLVLRSACEMHRLPLAQTWIPCVQQGKEGCRHSEDNYLLCISPVEQACYVGDPKIRPFHESCTEHHLLKGEGVAGGAFVTNQPCFSDDITSLSKKDYPLSHHARLFGLRAAVAIRLRSILNDTDDFVLEFFLPVECNDSEEQRKMLTSLSIIIQKLCHSLRVISDKELEEANLSIDEMISSVEGGFDRTVICEELQHKGTVASLDTEEKISETTGRKFSDPRQQQESPILKGNFDCVRECSTSVQGNLSSVRMSKMGERRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKEQACSQL 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7456g00008 657 PANTHER PROTEIN NLP8 111 652 IPR045012 GO:0003700
Vium7456g00008 657 Pfam RWP-RK domain 603 650 IPR003035 -
Vium7456g00008 657 Gene3D - 182 324 IPR029016 -
Vium7456g00008 657 MobiDBLite consensus disorder prediction 1 22 - -
Vium7456g00008 657 ProSiteProfiles RWP-RK domain profile. 588 657 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7456g00008 Vium-Chr7456 50650 54837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7456g00008 29 650 NLP Transcription Factor Family AT1G20640 50.157 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vium7456g00008 RWP-RK 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7456g00008 - - gmx:100785135 1065.06