Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7451g00001 ATGAGAAGTGAAGAGATTGTGTTGTCTTTCTCCTTTCTTCTTCTCTGCCTGCCGCTATGCTTCCAAATATGTTTGGGTGGAGATACTCTGAAGGCTAACCAGTTCATAACTCAGGACTCCCAAGGAAACCTTGTTTCATCTAACGCCACATTTGAGCTGGGCTTTTTTTCTCCTGCTGAGAAAAGTGGAGGGAAATACCTGGGGATTTGGTATCACGCCTTGGAACCACAAACAGTAGTGTGGGTTGCCAACAGAGATCATCCTGTTCCAGATTCCGGTGGAGTTTTTCGAATTGCGGAGGATGGAAATCTGGTGGTAGAATATGCATTCAGAAGCCTCTGGTCTTCTGAACTTGGAGCATCCTCGTCCTCTAACAGAACACTGCAGCTCCTAGATTCTGGGAATCTAGTACTAAAAGAGGATGACTCTGAAGCGACATACCTGTGGGAAAGCTTCCAGAACCCAACAGACACGTTTCTTCCCGGCATGAAAATGGATGCGACTTTGTCGTTGACTTGTTGGAGAGACTCCTCTAACCCAGCACCTGGGAACTTCACCTTCAAGCTGACTCAAAAGGCTGAGACACGGAGCTTCGTTGTGCAATATCAATCACAAATCCACTTGGCACTTGATGAATATGACACAGAAGCGGCTTCCCAGAAGGTATTTAATTTGTTGAACAACGACATCTGGAGTGCTAAAACGTATAATTATTCTAACAAAACACTATTCGTATCAAAACCTTATGTGTACTATAAATCAAGGCTTTTGATGAATTCTAGCGGGGAGATAGTGTTTCTGGAGTGGGATGAGGCAGAATCAAATTGGACTAAGATATGGTCGGCGCCAGAGAACAACTGTGACCTACCTGACTATTGTGGGAGCTTCAGCCTATGTAACAGAGATAACTTCATTCAGTGCAAATGTTTGCCAGGATTCAGTCGTATTCATGATTCTCGTTCTGATGGAGAATCCGAGTCCAAAGGATGTGTGAGAAAATCAGGATCGTGTACCAACAAGGACGTGATGTTCCTGAACTTAACCAAGATAAAAGTGGGCGACCCAGACCAACAAATTTATGCTCAAACAGAAGCAGAATGCCAATCCATCTGCATCGACATGTGTCCCGAATCACAGTGCCAAGCCTATTCATTTAATATTTCGACCAATCGCGACGATAATTTATACTCGTGCAGAATCTGGACGCGGCCTTTACCTTCTCTTGTTGAGAAGTACGCGCGCGGTAGTGATCTTTCTATCTTGGTTAAAACATCAGATATAGCACCAACTGCTAAATCGTGTGAACCTTGCGGCACATATGTCATTCCCTATCCGCTGAGCACTGGACCAAACTGTGGAGACCCCATGTACAACAAGTTCAATTGCGACAATTCCACTGGCAAAGTTAGTTTTATGATTCCCGGACGTATATCATACCCAGTAACTTGGATCGATGAAGATTCCAGAATGTTTGCCATTCAAACAGACGATTTCTATTCCTTCAATTACAGTTTCAGCAGTCAGAATAGCACTGATTTTCCGTTTAAGGTAGCTCAGTACAATGAAGATGCCGTAATAAAAATCAGTTGGTTACCAGCGCCAGAACCCCCCTGTAGTCAGCGTACAGACTGCATTAGTTGGCCAAATTCAACATGCAGAGCAACAGGGGAAGGTGGAAGTAGGTGCCTTTGTAATTCAAACTATAAATGGAATAACACATTAATGAGCTGCACCCAAGAGCAATCAGGAAATCACTCAACTCGACTAGAACTGATTCTTTTAGCAACTCTTGGTTCCCTGGCTGCTGTGACATGCATAATAGCTTTTGGCTTCGTGTGGAGAAAGAAAAAGCCCCGTAAACATGACCGAGCAAGCACCCGAATTCAGGAGAGCTTGTATGAGAGTGAAAGACATGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAAGACATCGAAGGCATTGAAGTTCCCTTTTACACTTTTGCAAGCATTCTCGCAGCTACAGATAGTTTCTCGGATTCTAACAAGCTTGGAAGAGGAGGTTATGGACCTGTTTATAAGGGAACGTTTCCTGGAGGTCAAGAAATAGCTGTAAAGAGACTTTCAAGTGTTTCCACTCAAGGCCTGCAAGAATTCAAAAATGAGGTTATTTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGACTGAGGGGCTACTGCATAAAAGGGGATGAAAAAATCTTACTTTATGAATACATGCCAAATAAGAGTTTGGACTCATTTATATTTGACCGTAGTCGAACTATACTGTTGGATTGGCCGATGCGGTTTGAGATAATAGTAGGCATTGCACGAGGCATGCTATACCTTCATCAAGACTCTAGATTGAGAGTGATTCATAGAGACATGAAAACCAGCAACGTTCTCTTAGACGAGGAAATGAATCCAAAGATATCTGACTTTGGTCTTGCCAAAATATTTGGAGGAAAAGAAACTGAAGCAAGTACAGGGAGAGTGATGGGAACCTATGGATACATGGCTCCAGAGTACGCTTTGGATGGACTTTTTTCAGTGAAATCTGATGTTTTCAGTTTTGGAGTGGTCCTACTGGAGATTCTTAGTGGAAAAAAGAACACAGGATTCTATGAGTCCAAACAAATTTCTAGCCTTTTGGGTTATGCATGGAACTTATGGTCAGAGAACAAGATACTGGATTTAATGGATTCTAGTCTTGGTGAAACATGCAACGAAAATCAATTTTTCAAATGTGCAGTTGTTGGATTATTATGCATACAAGATGAACCNATAAATATCTTTGTTGGGCATGCCGACATTTGGTGTCAAAATTTTGGGAAGAAGGATCACTTAGATCGTAGAAGGCTTGTTATAGCAATGAGAAGTGAAGAGATTGTGTTGTCTTTCTCCTTTCTTCTTCTCTGGCTGCCGATATGCTTCGATATATGTTTGGGTGGAGATGCTCTGAAGGCTAACCAGAACATAACTCAGGACTCCCAAGGAAACCTTGTTTCATCTAACGCCACATTTGAGCTGGGCTTTTTTTCTCCTGCTGAGAAAAGTGGAGGGAAATACCTGGGGATTTGGTATCACGCCTTGGAACCACAAACAGTCGTGTGGGTTGCCAACAGAGATCATCCTGTTCCAGATTCCGGTGGAGTTTTTCGAATTGCGGAGGATGGAAATCTGGTGGTAGAATATGCATTCAGAAGCCTCTGGTCTTCTGAACTTGGAGCATCCTCGTCCTCTAACAGAACACTGCAGCTCCTAGATTCTGGGAATCTAGTACTAAAAGAGGATGACTCTGAAGCGACATACCTGTGGGAAAGCTTCCAGAACCCAACAGACACGTTTCTTCCCGGCATGAAAATGGATGCGACTTTGTCGTTGACTTGTTGGAGAGACTCCTCTAACCCAGCACCTGGGAACTTCACCTTCAAGCTGACTCAAAAGGCTGAGACACGGAGCTTCGTTGTGCAATATCAATCACAAATCCACTTGGCACTTGATGAATATGACACAGAAGCGGCTTCCCAGAAGGTATTTAATTTGTTGAACAACGACATCTGGAGTGCTAAAACGTATAATTATTCTAACAAAACACTATTCGTATCAAAACCTTATGTGTACTATAAATCAAGGCTTTTGATGAATTCTAGCGGGGAGATAGTGTTTCTGGAGTGGGATGAGGCAGAATCAAATTGGACTAAGATATGGTCGGCGCCAGAGAACAACTGTGACCTACCTGACTATTGTGGGAGCTTCAGCCTATGTAACAGAGATAACTTCATTCAGTGCAAATGTTTGCCAGGATTCAGTCGTATTCATGATTCTCGTTCTGATGGAGAATCCGAGTCCAAAGGATGTGTGAGAAAATCAGGATCGTGTACCAACAAGGACGTGATGTTCCTGAACTTAACCAAGATAAAAGTGGGCGACCCAGACCAACAAATTTATGCTCAAACAGAAGCAGAATGCCAATCCATCTGCATCGACATGTGTCCCGAATCACAGTGCCAAGCCTATTCATTTAATATTTCGACCAATCGCGACGATAATTTATACTCGTGCAGAATCTGGACGCGGCCTTTACCTTCTCTTGTTGAGAAGTACGCGCGCGGTAGTGATCTTTCTATCTTGGTTAAAACATCAGATATAGCACCAACTGCTAAATCGTGTGAACCTTGCGGCACATATGTCATTCCCTATCCGCTGAGCACTGGACCAAACTGTGGAGACCCCATGTACAACAAGTTCAATTGCGACAATTCCACTGGCAAAGTTAGTTTTATGATTCCCGGACGTATATCATACCCAGTAACTTGGATCGATGAAGATTCCAGAATGTTTGCCATTCAAACAGACGATTTCTATTCCTTCAATTACAGTTTCAGCAGTCAGAATAGCACTGATTTTCCGTTTAAGGTAGCTCAGTACAATGAAGATGCCGTAATAAAAATCAGTTGGTTACCAGCGCCAGAACCCCCCTGTAGTCAGCGTACAGACTGCATTAGTTGGCCAAATTCAACATGCAGAGCAACAGGGGAAGGTGGAAGTAGGTGCCTTTGTAATTCAAACTATAAATGGAATAACACATTAATGAGCTGCACCCAAGAGCAATCAGGAAATCACTCAACTCGACTAGAACTGATTCTTTTAGCAACTCTTGGTTCCCTGGCTGCTGTGACATGCATAATAGCTTTTGGCTTCGTGTGGAGAAAGAAAAAGCCCCGTAAACATGACCGAGCAAGCACCCGAATTCAGGAGAGCTTGTATGAGAGTGAAAGACATGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAAGACATCGAAGGCATTGAAGTTCCCTTTTACACTTTTGCAAGCATTCTCGCAGCTACAGATAGTTTCTCGGATTCTAACAAGCTTGGAAGAGGAGGTTATGGACCTGTTTATAAGGGAACGTTTCCTGGAGGTCAAGAAATAGCTGTAAAGAGACTTTCAAGTGTTTCCACTCAAGGCCTGCAAGAATTCAAAAATGAGGTTATTTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGACTGAGGGGCTACTGCATAAAAGGGGATGAAAAAATCTTACTTTATGAATACATGCCAAATAAGAGTTTGGACTCATTTATATTTGACCGTAGTCGAACTATACTGTTGGATTGGCCGATGCGGTTTGAGATAATAGTAGGCATTGCACGAGGCATGCTATACCTTCATCAAGACTCTAGATTGAGAGTGATTCATAGAGACATGAAAACCAGCAACGTTCTCTTAGACGAGGAAATGAATCCAAAGATATCTGACTTTGGTCTTGCCAAAATATTTGGAGGAAAAGAAACTGAAGCAAGTACAGGGAGAGTGATGGGAACCTATGGATACATGGCTCCAGAGTACGCTTTGGATGGACTTTTTTCAGTGAAATCTGATGTTTTCAGTTTTGGAGTGGTCCTACTGGAGATTCTTAGTGGAAAAAAGAACACAGGATTCTATGAGTCCAAACAAATTTCTAGCCTTTTGGGTTATGTATGTTTATTGTGTTGCTGTCTTGTGTTGTTTTTGTGA 5586 0.4252 MRSEEIVLSFSFLLLCLPLCFQICLGGDTLKANQFITQDSQGNLVSSNATFELGFFSPAEKSGGKYLGIWYHALEPQTVVWVANRDHPVPDSGGVFRIAEDGNLVVEYAFRSLWSSELGASSSSNRTLQLLDSGNLVLKEDDSEATYLWESFQNPTDTFLPGMKMDATLSLTCWRDSSNPAPGNFTFKLTQKAETRSFVVQYQSQIHLALDEYDTEAASQKVFNLLNNDIWSAKTYNYSNKTLFVSKPYVYYKSRLLMNSSGEIVFLEWDEAESNWTKIWSAPENNCDLPDYCGSFSLCNRDNFIQCKCLPGFSRIHDSRSDGESESKGCVRKSGSCTNKDVMFLNLTKIKVGDPDQQIYAQTEAECQSICIDMCPESQCQAYSFNISTNRDDNLYSCRIWTRPLPSLVEKYARGSDLSILVKTSDIAPTAKSCEPCGTYVIPYPLSTGPNCGDPMYNKFNCDNSTGKVSFMIPGRISYPVTWIDEDSRMFAIQTDDFYSFNYSFSSQNSTDFPFKVAQYNEDAVIKISWLPAPEPPCSQRTDCISWPNSTCRATGEGGSRCLCNSNYKWNNTLMSCTQEQSGNHSTRLELILLATLGSLAAVTCIIAFGFVWRKKKPRKHDRASTRIQESLYESERHVKGLIGLGSLEEKDIEGIEVPFYTFASILAATDSFSDSNKLGRGGYGPVYKGTFPGGQEIAVKRLSSVSTQGLQEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDRSRTILLDWPMRFEIIVGIARGMLYLHQDSRLRVIHRDMKTSNVLLDEEMNPKISDFGLAKIFGGKETEASTGRVMGTYGYMAPEYALDGLFSVKSDVFSFGVVLLEILSGKKNTGFYESKQISSLLGYAWNLWSENKILDLMDSSLGETCNENQFFKCAVVGLLCIQDEPINIFVGHADIWCQNFGKKDHLDRRRLVIAMRSEEIVLSFSFLLLWLPICFDICLGGDALKANQNITQDSQGNLVSSNATFELGFFSPAEKSGGKYLGIWYHALEPQTVVWVANRDHPVPDSGGVFRIAEDGNLVVEYAFRSLWSSELGASSSSNRTLQLLDSGNLVLKEDDSEATYLWESFQNPTDTFLPGMKMDATLSLTCWRDSSNPAPGNFTFKLTQKAETRSFVVQYQSQIHLALDEYDTEAASQKVFNLLNNDIWSAKTYNYSNKTLFVSKPYVYYKSRLLMNSSGEIVFLEWDEAESNWTKIWSAPENNCDLPDYCGSFSLCNRDNFIQCKCLPGFSRIHDSRSDGESESKGCVRKSGSCTNKDVMFLNLTKIKVGDPDQQIYAQTEAECQSICIDMCPESQCQAYSFNISTNRDDNLYSCRIWTRPLPSLVEKYARGSDLSILVKTSDIAPTAKSCEPCGTYVIPYPLSTGPNCGDPMYNKFNCDNSTGKVSFMIPGRISYPVTWIDEDSRMFAIQTDDFYSFNYSFSSQNSTDFPFKVAQYNEDAVIKISWLPAPEPPCSQRTDCISWPNSTCRATGEGGSRCLCNSNYKWNNTLMSCTQEQSGNHSTRLELILLATLGSLAAVTCIIAFGFVWRKKKPRKHDRASTRIQESLYESERHVKGLIGLGSLEEKDIEGIEVPFYTFASILAATDSFSDSNKLGRGGYGPVYKGTFPGGQEIAVKRLSSVSTQGLQEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDRSRTILLDWPMRFEIIVGIARGMLYLHQDSRLRVIHRDMKTSNVLLDEEMNPKISDFGLAKIFGGKETEASTGRVMGTYGYMAPEYALDGLFSVKSDVFSFGVVLLEILSGKKNTGFYESKQISSLLGYVCLLCCCLVLFL 1861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7451g00001 1861 Pfam Protein tyrosine and serine/threonine kinase 1636 1835 IPR001245 GO:0004672|GO:0006468
Vium7451g00001 1861 Pfam Protein tyrosine and serine/threonine kinase 676 881 IPR001245 GO:0004672|GO:0006468
Vium7451g00001 1861 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 1600 1708 - -
Vium7451g00001 1861 ProSiteProfiles PAN/Apple domain profile. 1297 1385 IPR003609 -
Vium7451g00001 1861 Gene3D Phosphorylase Kinase; domain 1 1607 1708 - -
Vium7451g00001 1861 Gene3D Phosphorylase Kinase; domain 1 647 748 - -
Vium7451g00001 1861 CDD B_lectin 1004 1115 IPR001480 -
Vium7451g00001 1861 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Vium7451g00001 1861 SMART blect_4 994 1115 IPR001480 -
Vium7451g00001 1861 SMART blect_4 33 155 IPR001480 -
Vium7451g00001 1861 SUPERFAMILY alpha-D-mannose-specific plant lectins 1039 1134 IPR036426 -
Vium7451g00001 1861 SMART ntp_6 339 422 IPR003609 -
Vium7451g00001 1861 SMART ntp_6 1299 1382 IPR003609 -
Vium7451g00001 1861 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1709 1854 - -
Vium7451g00001 1861 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 749 935 - -
Vium7451g00001 1861 ProSiteProfiles Protein kinase domain profile. 673 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7451g00001 1861 SUPERFAMILY Protein kinase-like (PK-like) 656 909 IPR011009 -
Vium7451g00001 1861 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 640 748 - -
Vium7451g00001 1861 ProSiteProfiles PAN/Apple domain profile. 337 425 IPR003609 -
Vium7451g00001 1861 SMART serkin_6 1633 1861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7451g00001 1861 SMART serkin_6 673 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7451g00001 1861 CDD STKc_IRAK 1639 1833 - -
Vium7451g00001 1861 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 931 - -
Vium7451g00001 1861 ProSiteProfiles Bulb-type lectin domain profile. 29 151 IPR001480 -
Vium7451g00001 1861 Gene3D Transferase(Phosphotransferase) domain 1 749 933 - -
Vium7451g00001 1861 Gene3D Transferase(Phosphotransferase) domain 1 1709 1853 - -
Vium7451g00001 1861 CDD STKc_IRAK 679 931 - -
Vium7451g00001 1861 Pfam S-locus glycoprotein domain 250 315 IPR000858 GO:0048544
Vium7451g00001 1861 Pfam S-locus glycoprotein domain 1210 1275 IPR000858 GO:0048544
Vium7451g00001 1861 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 174 IPR036426 -
Vium7451g00001 1861 FunFam Os04g0303100 protein 1029 1167 - -
Vium7451g00001 1861 ProSiteProfiles Protein kinase domain profile. 1633 1861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7451g00001 1861 Gene3D - 984 1113 IPR036426 -
Vium7451g00001 1861 Gene3D - 23 153 IPR036426 -
Vium7451g00001 1861 CDD B_lectin 44 155 IPR001480 -
Vium7451g00001 1861 FunFam Receptor-like serine/threonine-protein kinase SD1-8 982 1112 - -
Vium7451g00001 1861 SUPERFAMILY Protein kinase-like (PK-like) 1616 1842 IPR011009 -
Vium7451g00001 1861 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1754 1766 IPR008271 GO:0004672|GO:0006468
Vium7451g00001 1861 FunFam Receptor-like serine/threonine-protein kinase SD1-8 22 152 - -
Vium7451g00001 1861 ProSiteProfiles Bulb-type lectin domain profile. 989 1111 IPR001480 -
Vium7451g00001 1861 FunFam Os04g0303100 protein 69 207 - -
Vium7451g00001 1861 Pfam D-mannose binding lectin 1038 1127 IPR001480 -
Vium7451g00001 1861 Pfam D-mannose binding lectin 78 167 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7451g00001 Vium-Chr7451 5054 13865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7451g00001 663 931 Receptor kinase-like Gene Family AT4G23230 59.108 7.56e-106 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium7451g00001 PK_Tyr_Ser-Thr 8.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7451g00001 - - vun:114184726 2515.72