LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium7448g00003	ATGGCCACTTATCCCAACAACGTCAATGTGGTTGGAAAAAGCATTGACGATGATGACAATTGTAATGAGTTGGTTCCTACTTTAAACATGTGTTTTGACACAATGGAAGAAGCAAAGAAATTTTATTCGGTGTACGGGAGAAGATGTCGTTTTGGCGTCCGAACCAGAACTTCTAAAAAGGATGACAACAACGAATTGTACTACTTGAGATTGGTTTGTTCTAGGGAAGGTAAATATGTTTCCACCATTCGTCCAGAGGTGAAAACTCTGCCTAGTCAGACTAATCAATGTCCTACTGGAATAACCATTGCACGAAAAGAGGACAAATGGTTTTTAAGGACTGTGGTTGTAGAGCACAGTCATGACCTGTGTCCACAAACCTCCAATCTAATCCGTTCTAATAGACAATTAAACATGCATGCCAAACACACTTTGGGGGTGAATGATGATGCCGATGTACGTATTAATAAGAGTTTCCTTAGCATAGTTAGTGAAGCTGGTGGATATGAAAACATGGAATTTGTGGAGTGGGATGTTAGGAACTTCATTGGTCAACATAGAAGGTCACTGTGTAAGGAGGGTGATGGACAAGCATTGCTACATCACTTTTCAAAAATGAGAGAGCTCAATAATGATTTCTTCTACGACATATAA	654	0.396	MATYPNNVNVVGKSIDDDDNCNELVPTLNMCFDTMEEAKKFYSVYGRRCRFGVRTRTSKKDDNNELYYLRLVCSREGKYVSTIRPEVKTLPSQTNQCPTGITIARKEDKWFLRTVVVEHSHDLCPQTSNLIRSNRQLNMHAKHTLGVNDDADVRINKSFLSIVSEAGGYENMEFVEWDVRNFIGQHRRSLCKEGDGQALLHHFSKMRELNNDFFYDI	217

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium7448g00003	217	PANTHER	OS01G0519700 PROTEIN	18	216	-	-
	Vium7448g00003	217	Pfam	FAR1 DNA-binding domain	40	124	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium7448g00003	Vium-Chr7448	10824	11477	Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Vium7448g00003		FAR1	1.2e-09	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium7448g00003	-		-	var:108341250	420.239