Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7448g00001 ATGGCCACTTATCCCAACAACGTCAATGTGGTTGGAGAAAGCATTGACGATGATGACAATTGTAATGAGTTGGTTCCTACTTTAAACATGTGTTTTGACACAATGGAAGAAGCAAAGAAATTTTATTCGATGTACGGGAGAAGATGTGGTTTTGGCATCCGAACCAGAACTTCTAAAAAGGATGAAAACAACGAATTGTACTACTTGAGATTGGTTTGTTCTAGGGAAGGTAAATATGTTTTCACCATTCGTCCAGAGGTGAAAACTCTGCCTAGTCAGACTAATCAATGTGCTGCTGGAATAACCATTGCACAAAAAGAGGGCAAATGGTTTGTAAGGACTGTGGTTGTAGAGCACAGTCATGACCTGTGTCCACAAACCTCCAATCTAATCCGTTCTAATAGACAATTGAACATGCATGCCAAACACACTTTAGGGGTGAATGATGATGCCGGTGTACGTATTAATAAGAGTTTCCTTAGCATAGTTAGTGAAGCTGGTGGATATGAAAACATGGAATTTGTGGAGCGGGATGCTAGGAACTTCATTGGTCAACGTAGAAGGTCACTGTGTAAGGAGGGTGATGGACAAGCATTGCTACATCACTTTTAA 612 0.4069 MATYPNNVNVVGESIDDDDNCNELVPTLNMCFDTMEEAKKFYSMYGRRCGFGIRTRTSKKDENNELYYLRLVCSREGKYVFTIRPEVKTLPSQTNQCAAGITIAQKEGKWFVRTVVVEHSHDLCPQTSNLIRSNRQLNMHAKHTLGVNDDAGVRINKSFLSIVSEAGGYENMEFVERDARNFIGQRRRSLCKEGDGQALLHHF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7448g00001 203 PANTHER OS01G0519700 PROTEIN 18 203 - -
Vium7448g00001 203 Pfam FAR1 DNA-binding domain 40 124 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7448g00001 Vium-Chr7448 830 1441 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium7448g00001 FAR1 6.7e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7448g00001 - - vum:124845194 421.009