Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7446g00002 ATGGAGAACCAACAAATTATCATGCTAATCATTTACACTACTTTCTTTTGTTTCATGCCCACTTCCTCTACTATCACCCCAAATCAGTCCCTACAATATCCTGAGACACTTATTTCTTCTGCAGGAAACTTTGAAGCCGGATTTTTTGATTTTGGAAACTCAAGAGGACAATATTTTGGTATATGGTACAAGAACATATCACCTAGGATTATTGTGTGGGTTGCCAACAGGAATGTCCCAGCACAAAACACAACAGCAGTTCTGAAACTTACTCATGAAGGAAATCTTGTCATTCTTGATGGCTCCGGAGGAAGAGTGTGGTCCTCCAACTCTTCAAAAATTGCAGTGAAACCAGTTATGCAGCTTTTAGATTCAGGAAACCTTGTTGTCAAAGATGGAGAGAGCTCAGAGAACTTCTTGTGGGAAAGCTTTGATTATCCTGGAGACACTTTCCTTGCAGGAATGAAACTGAAAAGTGATTTTGTTACTGGTCCATATCGGTATCTCACGTCTTGGAGGGACAGTGATGATCCAGCTGAAGGTGAGTTTTCTTATATGATCGATACAAAGGGCTTTCCTCAGCAAGTTACTACAGACGGAACTACAATTTTGTACAGCACAGGGCCTTGGAATGGCTATCTTTTCAGTGGTGTTTCTTGGGACAGAATGAGCAGATTCTTGAATTTCTCTTTTGAGTTCACTAACAAAGGGGTTTCTTATGGATATGAAATGTTAAACAGTTCAGTGCTTAGTAGAACAATGCTCAAGCTCAATCCAAGAGGGGCTACAGAGCGTTTTCTATGGTCAAACCAAAGACAAAGTTGGGATATTGTAAACAGTCATCCAACAGATCAGTGTGAATATTTTGCCACTTGTGGTGTCAACTCTATCTGCAATGTTAATAATGTTCCAATATGTGAATGCTTGCAAGGTTTCACACCAAAGTTTCAAGCAAAGTGGGATACTCATGATTGGTCTGGTGGTTGTGTCAGAAGAACAAATTTAAGTTGTGATAATGGAGATTGGTTTAAGGAGTACATAGGAATAAAGCTTCCTGAAACGTCTTCTTCCTGGTTTGACAGGAGCTTGAGCCTTCAGGAATGTGAGACATTGTGTTTGAGAAATTGCTCTTGTACTGCATATGCAAATTCAGATATTAGAGATGGTGGGAGTGGTTGTTTGCTTTGGTTCCATGACATTGGGGACATGAGAACTCACCCTGATCGAGGGCAAGAAATTCATATACGACTGCCATTTTCTGAACGTGGAAGGAATAAGAGGGACCGAAATCCAAAGAGACTTGCAGGGATTGTGGTAGGACTTGTTACATTCATAGTTGGACTAACAATTCTTGTGTGGGCGACTTCAAAACGTATAAAAGGGATGAAGCACGTGATGGAGAAGGAAAACAACAGCTTACCGACAATGTTTGATTTTTCAACCATTGATATTGCCACAAATCATTTTTCTAAGACAAACAAGTTAGGAGAAGGTGGCTTTGGAACAGTACACAAGGGAACGTTGATAGATGGACAAGAGATTGCAGTCAAGAGACTTTCAAAAACTTCGAGACAGGGAACTGAGCAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCTGTTCAACAAGATGAGAAGTTGTTGATCTATGAATTCATGCCCAACAGAAGCTTGAATTACTTTATTTTTGATACAATGAGAGGCAAATTACTAGATTGGACTAAGCGGTTGAAAATTATCGAGGGAATTGCTCGGGGTCTTATGTATCTTCATCAAGATTCAAGACTTACGATAATACATAGAGACATCAAAACAAGTAACATTCTTCTTGATGATAATATGACTCCAAAGATATCAGATTTTGGATTAGCAAGAATATTTGGAGTAGATCAAGCTGAAGAAAATACAAACAGAGTGATGGGAACGCATGGCTATATGCCTCCAGAATATGAAGTGCATGGTTCTTTCTCAACCAAATCTGATGTTTTCAGTTTTGGTGTAATTGTTATTGAGATAATAAGTGGAAGGAAGAATCGTGGATTTCATGACCCTCACCATCATCTTCTCAACCTTCTTGGACATGCGTGGAGATTATGGAATGAAGAAAGGCCACTGGAGTTAATGGATGAGATATTAGATGAAGGTGGAGACTTATGTTTAGAAATACTGCGGTGCATTCATGTGGGTCTGTTGTGTGTACAACAGAATCCAGAAAATAGGCCTAACATGTCATCTGTTGTTTTGATGTTAAATGGTGAGAAGTTGCTACCAAAACCAAGCCAACCTGGCTTCTATATAGGAAAAGATAATATTGCTGACACTGAATCTTCAAAGCAATATGAAAGGTGTTCAATATATGAAGTTTCAATTTCATCCTTAGATGGGCGATAG 2427 0.3906 MENQQIIMLIIYTTFFCFMPTSSTITPNQSLQYPETLISSAGNFEAGFFDFGNSRGQYFGIWYKNISPRIIVWVANRNVPAQNTTAVLKLTHEGNLVILDGSGGRVWSSNSSKIAVKPVMQLLDSGNLVVKDGESSENFLWESFDYPGDTFLAGMKLKSDFVTGPYRYLTSWRDSDDPAEGEFSYMIDTKGFPQQVTTDGTTILYSTGPWNGYLFSGVSWDRMSRFLNFSFEFTNKGVSYGYEMLNSSVLSRTMLKLNPRGATERFLWSNQRQSWDIVNSHPTDQCEYFATCGVNSICNVNNVPICECLQGFTPKFQAKWDTHDWSGGCVRRTNLSCDNGDWFKEYIGIKLPETSSSWFDRSLSLQECETLCLRNCSCTAYANSDIRDGGSGCLLWFHDIGDMRTHPDRGQEIHIRLPFSERGRNKRDRNPKRLAGIVVGLVTFIVGLTILVWATSKRIKGMKHVMEKENNSLPTMFDFSTIDIATNHFSKTNKLGEGGFGTVHKGTLIDGQEIAVKRLSKTSRQGTEQFKNEVKLMATLQHRNLVKLLGCSVQQDEKLLIYEFMPNRSLNYFIFDTMRGKLLDWTKRLKIIEGIARGLMYLHQDSRLTIIHRDIKTSNILLDDNMTPKISDFGLARIFGVDQAEENTNRVMGTHGYMPPEYEVHGSFSTKSDVFSFGVIVIEIISGRKNRGFHDPHHHLLNLLGHAWRLWNEERPLELMDEILDEGGDLCLEILRCIHVGLLCVQQNPENRPNMSSVVLMLNGEKLLPKPSQPGFYIGKDNIADTESSKQYERCSIYEVSISSLDGR 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7446g00002 808 SMART serkin_6 489 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7446g00002 808 ProSiteProfiles PAN/Apple domain profile. 337 418 IPR003609 -
Vium7446g00002 808 SMART blect_4 28 147 IPR001480 -
Vium7446g00002 808 PIRSF SRK 3 808 IPR024171 GO:0004674
Vium7446g00002 808 SMART ntp_6 338 417 IPR003609 -
Vium7446g00002 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 565 770 - -
Vium7446g00002 808 Gene3D Phosphorylase Kinase; domain 1 462 564 - -
Vium7446g00002 808 CDD B_lectin 35 147 IPR001480 -
Vium7446g00002 808 ProSiteProfiles Bulb-type lectin domain profile. 22 143 IPR001480 -
Vium7446g00002 808 ProSiteProfiles Protein kinase domain profile. 489 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7446g00002 808 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 753 - -
Vium7446g00002 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 144 - -
Vium7446g00002 808 Gene3D Transferase(Phosphotransferase) domain 1 565 769 - -
Vium7446g00002 808 Pfam S-locus glycoprotein domain 205 316 IPR000858 GO:0048544
Vium7446g00002 808 CDD PAN_AP_plant 333 418 - -
Vium7446g00002 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 454 564 - -
Vium7446g00002 808 Pfam D-mannose binding lectin 71 173 IPR001480 -
Vium7446g00002 808 CDD STKc_IRAK 495 764 - -
Vium7446g00002 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Vium7446g00002 808 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 178 IPR036426 -
Vium7446g00002 808 Pfam Protein tyrosine and serine/threonine kinase 491 759 IPR001245 GO:0004672|GO:0006468
Vium7446g00002 808 SUPERFAMILY Protein kinase-like (PK-like) 476 774 IPR011009 -
Vium7446g00002 808 Gene3D - 17 144 IPR036426 -
Vium7446g00002 808 Pfam PAN-like domain 337 403 IPR003609 -
Vium7446g00002 808 ProSitePatterns Protein kinases ATP-binding region signature. 495 517 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7446g00002 Vium-Chr7446 11525 15221 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7446g00002 457 777 Receptor kinase-like Gene Family AT4G11480 55.828 2.79e-122 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium7446g00002 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7446g00002 - - gmx:100819820 1211.82