Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7446g00001 ATGGAGAACCAACAAATTATCATGCTAATCATTTACACTACTTTCTTTTGTTTCATGCCCACTTCCTCTACTATCACCCCAAATCAGTCCCTACAATATCCTGAGACACTTATTTCTTCTGCAGGAAACTTTGAAGCCGGATTTTTTGATTTTGGAAACTCAAGAGGACAATATTTTGGTATATGGTACAAGAACATATCACCTAGGATTATTGTGTGGGTTGCCAACAGGAATGTCCCAGCACAAAACACAACAGCAGTTCTGAAACTTACTCATGAAGGAAATCTTGTCATTCTTGATGGCTCCGGAGGAAGAGTGTGGTCCTCCAACTCTTCAAAAATTGCAGTGAAACCAGTTATGCAGCTTTTAGATTCAGGAAACCTTGTTGTCAAAGATGGAGAGAGCTCAGAGAACTTCTTGTGGGAAAGCTTTGATTATCCTGGAGACACTTTCCTTGCAGGAATGAAACTGAAAAGTGATTTTGTTACTGGTCCATATCGGTATCTCACGTCTTGGAGGGACAGTGATGATCCAGCTGAAGGTGAGTTTTCTTATATGATCGATACAAAGGGCTTTCCTCAGCAAGTTACTACAGACGGAACTACAATTTTGTACAGCACAGGGCCTTGGAATGGCTATCTTTTCAGTGGTGTTTCTTGGGACAGAATGAGCAGATTCTTGAATTTCTCTTTTGAGTTCACTAACAAAGGGGTTTCTTATGGATATGAAATGTTAAACAGTTCAGTGCTTAGTAGAACAATGCTCAAGCTCAATCCAAGAGGGGCTACAGAGCGTTTTCTATGGTCAAACCAAAGACAAAGTTGGGATATTGTAAACAGTCATCCAACAGATCAGTGTGAATATTTTGCCACTTGTGGTGTCAACTCTATCTGCAATGTTAATAATGTTCCAATATGTGAATGCTTGCAAGGTTTCACACCAAAGTTTCAAGCAAAGTGGGATACTCATGATTGGTCTGGTGGTTGTGTCAGAAGAACAAATTTAAGTTGTGATAATGGAGATTGGTTTAAGGAGTACATAGGAATAAAGCTTCCTGAAACGTCTTCTTCCTGGTTTGACAGGAGCTTGAGCCTTCAGGAATGTGAGACATTGTGTTTGAGAAATTGCTCTTGTACTGCATATGCAAATTCAGATATTAGAGATGGTGGGAGTGGTTGTTTGCTTTGGTTCCATGACATTGGGGACATGAGAACTCACCCTGATCGAGGGCAAGAAATTCATATACGACTGCCATTTTCTGAACGTGGAAGGAATAAGAGGGACCGAAATCCAAAGAGACTTGCAGGGATTGTGGTAGGACTTGTTACATTCATAGTTGGACTAACAATTCTTGTGTGGGCGACTTCAAAACGTATAAAAGGGATGAAGCACGTGATGGAGAAGGAAAACAACAGCTTACCGACAATGTTTGATTTTTCAACCATTGATATTGCCACAAATCATTTTTCTAAGACAAACAAGTTAGGAGAAGGTGGCTTTGGAACAGTACACAAGGGAACGTTGATAGATGGACAAGAGATTGCAGTCAAGAGACTTTCAAAAACTTCGAGACAGGGAACTGAGCAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCTGTTCAACAAGATGAGAAGTTGTTGATCTATGAATTCATGCCCAACAGAAGCTTGAATTACTTTATTTTTGATACAATGAGAGGCAAATTACTAGATTGGACTAAGCGGTTGAAAATTATCGAGGGAATTGCTCGGGGTCTTATGTATCTTCATCAAGATTCAAGACTTACGATAATACATAGAGACATCAAAACAAGTAACATTCTTCTTGATGATAATATGACTCCAAAGATATCAGATTTTGGATTAGCAAGAATATTTGGAGTAGATCAAGCTGAAGAAAATACAAACAGAGTGATGGGAACGCATGGAAGGAAGAATCGTGGATTTCATGACCCTCACCATCATCTTCTCAACCTTCTTGGACATGCGTGGAGATTATGGAATGAAGAAAGGCCACTGGAGTTAATGGATGAGATATTAGATGAAGGTGGAGACTTATGTTTAGAAATACTGCGGTGCATTCATGTGGGTCTGTTGTGTGTACAACAGAATCCAGAAAATAGGCCTAACATGTCATCTGTTGTTTTGATGTTAAATGGTGAGAAGTTGCTACCAAAACCAAGCCAACCTGGCTTCTATATAGGAAAAGATAATATTGCTGACACTGAATCTTCAAAGCAATATGAAAGGTGTTCAATATATGAAGTTTCAATTTCATCCTTAGATGGGCGATAG 2334 0.3925 MENQQIIMLIIYTTFFCFMPTSSTITPNQSLQYPETLISSAGNFEAGFFDFGNSRGQYFGIWYKNISPRIIVWVANRNVPAQNTTAVLKLTHEGNLVILDGSGGRVWSSNSSKIAVKPVMQLLDSGNLVVKDGESSENFLWESFDYPGDTFLAGMKLKSDFVTGPYRYLTSWRDSDDPAEGEFSYMIDTKGFPQQVTTDGTTILYSTGPWNGYLFSGVSWDRMSRFLNFSFEFTNKGVSYGYEMLNSSVLSRTMLKLNPRGATERFLWSNQRQSWDIVNSHPTDQCEYFATCGVNSICNVNNVPICECLQGFTPKFQAKWDTHDWSGGCVRRTNLSCDNGDWFKEYIGIKLPETSSSWFDRSLSLQECETLCLRNCSCTAYANSDIRDGGSGCLLWFHDIGDMRTHPDRGQEIHIRLPFSERGRNKRDRNPKRLAGIVVGLVTFIVGLTILVWATSKRIKGMKHVMEKENNSLPTMFDFSTIDIATNHFSKTNKLGEGGFGTVHKGTLIDGQEIAVKRLSKTSRQGTEQFKNEVKLMATLQHRNLVKLLGCSVQQDEKLLIYEFMPNRSLNYFIFDTMRGKLLDWTKRLKIIEGIARGLMYLHQDSRLTIIHRDIKTSNILLDDNMTPKISDFGLARIFGVDQAEENTNRVMGTHGRKNRGFHDPHHHLLNLLGHAWRLWNEERPLELMDEILDEGGDLCLEILRCIHVGLLCVQQNPENRPNMSSVVLMLNGEKLLPKPSQPGFYIGKDNIADTESSKQYERCSIYEVSISSLDGR 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7446g00001 777 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 144 - -
Vium7446g00001 777 Gene3D Transferase(Phosphotransferase) domain 1 657 742 - -
Vium7446g00001 777 Gene3D Transferase(Phosphotransferase) domain 1 565 656 - -
Vium7446g00001 777 SMART serkin_6 489 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7446g00001 777 ProSiteProfiles PAN/Apple domain profile. 337 418 IPR003609 -
Vium7446g00001 777 SMART blect_4 28 147 IPR001480 -
Vium7446g00001 777 Gene3D Phosphorylase Kinase; domain 1 462 564 - -
Vium7446g00001 777 SMART ntp_6 338 417 IPR003609 -
Vium7446g00001 777 CDD B_lectin 35 147 IPR001480 -
Vium7446g00001 777 Gene3D - 17 144 IPR036426 -
Vium7446g00001 777 ProSiteProfiles Bulb-type lectin domain profile. 22 143 IPR001480 -
Vium7446g00001 777 PIRSF SRK 3 657 IPR024171 GO:0004674
Vium7446g00001 777 PIRSF SRK 654 777 IPR024171 GO:0004674
Vium7446g00001 777 ProSiteProfiles Protein kinase domain profile. 489 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7446g00001 777 Pfam S-locus glycoprotein domain 205 316 IPR000858 GO:0048544
Vium7446g00001 777 Pfam Protein kinase domain 490 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7446g00001 777 Pfam D-mannose binding lectin 71 173 IPR001480 -
Vium7446g00001 777 CDD PAN_AP_plant 333 418 - -
Vium7446g00001 777 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 722 - -
Vium7446g00001 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Vium7446g00001 777 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 178 IPR036426 -
Vium7446g00001 777 SUPERFAMILY Protein kinase-like (PK-like) 476 743 IPR011009 -
Vium7446g00001 777 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 454 564 - -
Vium7446g00001 777 Pfam PAN-like domain 337 403 IPR003609 -
Vium7446g00001 777 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 565 656 - -
Vium7446g00001 777 ProSitePatterns Protein kinases ATP-binding region signature. 495 517 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7446g00001 Vium-Chr7446 11525 15225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7446g00001 435 746 Receptor kinase-like Gene Family AT4G23190 46.893 5.60e-98 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium7446g00001 Pkinase 9.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7446g00001 - - gmx:100819820 1138.64