Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7442g00014 ATGGAAGCCAGCGCTGGACTGGTAGCAGGTTCGCATAACCGCAATGAGCTCGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGTCAAGTATGTGAGATTTGTGGTGATGGCGTTGGACTCACGGTGGATGGAGACTTATTTGTGGCTTGCAATGAGTGTGGTTTTCCAGTGTGCAGACCTTGCTATGAGTACGAAAGAAGAGAAGGGGGCCAGCTTTGTCCACAGTGCAAAACCAGATATAAGCGTCTCAAAGGGAGCCCGCGGGTGCAGGGAGATGATGAGGAGGAGGATGTGGATGACATTGAGCATGAGTTCAATATTGATGATGAAAAGAACAAGCATGGCCATGCTGCAGAGGCCATGCTTCATGGGAAAATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATTCCCAGTTCCCAATACCTGTCATTTCTGGGGGCCGATCTAGGCCTGTTAGTGGCGAGTTCCCAATATCATCCAATGGTTATGGGGAGCAGATGTTGTCTTCTTCATTGCATAAACGAGTGCATCCATATCCAATGTCTGAACCTGGGAGTGCCAGATGGGATGAAAAGAAAGAGGATGGATGGAAAGAAAGGATGGATGACTGGAAATTGCAGCAAGGCAATTTGGGGCCTGAACCTGAAGAAGATGCAGATGCAGACATGTCAGATGAAGCAAGGCAACCACTTTCAAGGAAAGTACCAATAGCATCTAGCAAAATCAATCCATACAGAATGGTTATTGTGGCACGCCTTGTCATTCTTGCTTTCTTCCTCAGATACAGACTTATGAATCCTGTGCATGATGCACTGGGGCTGTGGCTAACCTCTATCATATGTGAAATATGGTTTGCTTTTTCATGGATTCTGGATCAGTTTCCCAAGTGGTTTCCCATTGATCGAGAGACCTACCTTGACCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCAAACATGCTTTCTCCTGTAGATGTCTTTGTTAGTACCGTGGATCCAATGAAGGAACCTCCTCTGGTTACCGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCATGCTATATTTCGGATGATGGAGCCTCAATGTGTTCATTTGAGTCCCTGTCAGAAACTGCAGAGTTTGCAAGGAAGTGGGTACCGTTTTGTAAGAAATTTGCTATAGAACCTCGCGCCCCTGAGATGTACTTCAGTGAGAAGATAGACTACTTAAAGGACAAAGTGCAACCCACCTTTGTCAAGGAGCGTCGAGCCATGAAGAGGGAATACGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAGGCCCAGAAAGTTCCTCAGGGAGGATGGATTATGCAGGATGGGACACCATGGCCAGGAAACAACACTAAGGATCATCCTGGCATGATTCAAGTGTTTCTTGGAAGCAATGGGGGTCTAGATACTGAAGGAAACCAGCTTCCTCGTCTTGTTTATGTTTCTAGAGAGAAAAGACCTGGTTTTCAACACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTATCTGCTGTTCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCACTATGTCAATAACAGCAAGGCTGCCAGAGAGGCCATGTGCTTCTTGATGGACCCCCAGATTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGACGGTATTGATACACATGATCGTTATGCCAACAGAAACACGGTTTTCTTTGATATTAACATGAAGGGTCTTGATGGTATTCAAGGACCTGTATATGTGGGGACTGGGTGTGTTTTCAGGAGGCAAGCTTTGTATGGCTATGATCCTCCAAAGGGCCCCAAGCGTCCAAAAATGGTAAGCTGTGATTGCTGCCCTTGTTTTGGAAGCCGCAAGAAGTACAAGGAGAAGAGTGATGCAAATGGAGAGGCTGCTGCAAGCCTAAAAGGGATGGATGATGACAAAGAGATACTGATGTCCCAAATGAATTTTGAGAAGAAATTTGGACAGTCCTCTATCTTTGTGACTTCTACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCTTCGAGTCCAGCTGCCCTGCTTAAAGAAGCCATTCATGTGATCAGCTGTGGATATGAAGATAAAACTGAATGGGGACTTGAGCTTGGTTGGATCTATGGATCTATCACAGAAGATATTTTAACAGGCTTTAAGATGCATTGCCGTGGGTGGAGGTCTATTTACTGTATGCCTAAGAGAGCTGCATTCAAGGGCACTGCTCCAATCAACTTGTCAGATCGTCTCAATCAGGTGCTTCGTTGGGCACTTGGTTCCATTGAGATTTTCTTCAGTCACCATTGCCCTCTATGGTATGGCTTCAAGGAAAAGAAACTAAAGTGGCTTGAGAGATTTGCCTATGCAAACACAACTGTGTATCCATTCACCTCCATTCCTCTTGTTGCCTATTGTATTCTCCCTGCAGTTTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACCTTTGCTGGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATTGCAACTGGTATCCTAGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAGTGGTGGAGAAATGAGCAGTTTTGGGTTATTGGTGGAGTATCAGCTCACCTTTTTGCTGTGATACAAGGTCTGCTAAAGGTTCTGGCAGGAATTGACACCAACTTCACAGTCACATCCAAGGCAGCAGACGATGAGGACTTTGGAGAACTATACACCTTTAAGTGGACTACTCTCCTAATTCCTCCAACCACTATCTTGATCATTAACATTGTTGGTGTTGTTGCTGGAGTCTCAGATGCCATAAACAATGGCTACCAATCCTGGGGACCACTTTTTGGAAAACTCTTCTTTTCTTTCTGGGTGATTGTTCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACCATTGTGGTCATTTGGTCAGTTCTATTGGCTTCTATTTTCTCTTTGCTGTGGGTAAGAATTGATCCGTTTGTCCTCAAGACTAAGGGACCTGATACCAAGTTATGTGGAATCAACTGCTGA 3123 0.4512 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGGQLCPQCKTRYKRLKGSPRVQGDDEEEDVDDIEHEFNIDDEKNKHGHAAEAMLHGKMSYGRGPEDDENSQFPIPVISGGRSRPVSGEFPISSNGYGEQMLSSSLHKRVHPYPMSEPGSARWDEKKEDGWKERMDDWKLQQGNLGPEPEEDADADMSDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLSPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCSFESLSETAEFARKWVPFCKKFAIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGSNGGLDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQIGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVSCDCCPCFGSRKKYKEKSDANGEAAASLKGMDDDKEILMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGFKEKKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEDFGELYTFKWTTLLIPPTTILIINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7442g00014 1040 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 478 623 IPR029044 -
Vium7442g00014 1040 SUPERFAMILY Nucleotide-diphospho-sugar transferases 345 852 IPR029044 -
Vium7442g00014 1040 FunFam Cellulose synthase 449 623 - -
Vium7442g00014 1040 FunFam Cellulose synthase 19 110 - -
Vium7442g00014 1040 MobiDBLite consensus disorder prediction 212 237 - -
Vium7442g00014 1040 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Vium7442g00014 1040 CDD mRING-HC-C4C4_CesA 35 85 - -
Vium7442g00014 1040 Pfam Cellulose synthase 332 1034 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vium7442g00014 1040 SUPERFAMILY RING/U-box 21 107 - -
Vium7442g00014 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Vium7442g00014 1040 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 235 1007 - -
Vium7442g00014 1040 Coils Coil 430 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7442g00014 Vium-Chr7442 126759 132009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7442g00014 1 1040 Cell Wall Biosynthesis AT5G17420 85.605 0.0 1840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7442g00014 K10999 - gmx:100815436 2071.2