LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium7442g00013	ATGGAAGCTAGTACAGGTCTTTTTGCTGGTACTCCAAACAGCAAAGAGCTTGTGGCCATTCAAGGACACGATGAGCCTAAGCCGGTGAAGAACTTAGATGGTCAGCTCTGTGAGATATGTGGTGATTCTGTGGGAGTTACAGTTGAAGGAGACTTGTTTGTAGCTTGTGAAGAGTGTGGTTTCCCTGTGTGCAGGCCATGCTATGAGTATGAGAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGCATCAAAGGAAGTCCAAGAGTGGAGGGAGATGAGGATGAAGACGATGTGGATGACATTGAACATGAATTCAAGCATGAAGAGATGCAAAAGGGAAACATGATCCATGGAGATGATGATGGGAATTCTGAATCGGGTTTAGCAAAGGTAACTCTAAGAAGGAATAATTGTATTCTACAAGCATGCAGTTTACGTATAGTGAATGGGGAGCGGCTTTCTACAAGTGTGGGAGAACCTGCAGGTGCAAAGCTGGATGACAAGGAGAACATAGATGAGTGGATGTTGCGCCAAGGGAATCTGTGGCCTGAAACTGATGCCTCAGTTGATCAGGAAAAGGCCATGAAAGAGCCATTGTCAAGGAAAGTAGCAATACCATCAGGCAAACTCAGTCCTTACAGAATGATGGTTGTGGCTAGATTCCTCCTTCTATTACTCTTCTTCCAATACAGAATCTTCCACCCAGTACCTGATGCAGTTGGACTATGGTTCATATCTGTAACGTGTGAAATCTGGCTTGCATTATCCTGGATGATTGATCAGATTCCCAAATGGTTCCCCATTGATCGAGAGACGTATCTTGATCGTCTTTCAATCAGGTTTGAACAAGAGAACAAACCAAATATGCTTTCTCCAATAGATATCATTGTCACTACTGTGGATCCAATCAAGGAACCTCCTCTTGTGACAGCCAACACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCATGCTATGTTTCTGATGACGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAGTTTTCCAGAAAGTGGGTTCCTTTCTGCAAAAAGTTCTCTATAGAACCCAGAGCACCAGAAAAGTACTTCTCTGAGAAAATAGATTTTCTAAAGGATAAGCTTCAATCCACTTACGTAAAAGAACGGCGTACTATGAAGAGAGAATACGAAGAATTTAAGGTGAGAATAAATGCACTGGTGGCTAAATCTATGCGAGTTCCCCCAGAAGGGTGGACTATGAAAGATGAGACACCATGGCCAGGAAACAACCCCAAAGATCATCCAAGTATGATACAGGTCCTTCTTCCACACATTGTTGGTAATGAACTTCCTTGTCTTGTCTACACATCTCGTGAGAAAAGGCCTGCATTTCAACACCACGGCAAAGCTGGTGCAATCAACGCCTTGCTTCGAGTATCAGCAGTGTTAAGCAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCACTACGTAAATAACTGCAAAGTGGTGCGAGAGGCCATGTGTTTCTTTATGGACATACAACTTGGGAATGGCATTGGCTTTGTACAGTTTCCATTAAGATTTGACAGCCTAGATAGGCATGATCGTTATGCCAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAGGGACCTGCTTATGTTGGTTCAGCATGTATCTTCAGAAGGAAATCCTTAACTGGCAGTGACTCACCAGTGTCTTCAAAACGCCCAAGCATGGTGCAAGTACATTCAAAACAGGATGAGAATGGAGAAGAAGCTAGCATAACAGCAACAGATGAGGAAAAGGAACTATTGAAGTCACAGATGAATGATGAAAATAAATTTGGGAATTCCAATCCTATCATGAACCCTTCATTAACTGAAGAGGGTGGTATTGATCCTTCTTCCAGTCAGGAAGTTTTGCTTAAAGAAGCTATTCATGTCATGGGTTCTAAATATGAAGACAGAACTCTCTGGGGATATGAGGTGGGTTTAAGTTATGGATCTATAGCAGCAGATACTCTGACAAGTTTGAAGATGCATTGTCATGGTTGGAGGTCTGTATATTGCATGCCAAAAAGAGATCCATTCAGGGGTACAGCTCCTATCAACCTCACAGATAGACTCAACCAGGTGCTGAGATGGGCAGTGGGTTCACTTCAGATCCTATTCAGCCACCATTGCCCTCTTCTGTATGGCCTCAGTGGTGGAAGACTCAAGGGACTTCAAAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTAATATACTGTATCGTTCCTGCTATATGCTTGCTCACTGATAAATTCATCACACCATCGGTTGGCACTTTTGCAAGTCTAGTTTTCACCGCATTGTTCATCTCAATCTTTGCCTCGGCTATTCTTGAATTGAGATGGAGTGGAGTTAGCCTGGAGGAATGGTGGAGAAGCCAGCAATTCTGGGTGATTGGGAGTGTGTCTGCAAACCTCTTTGCCGTTGTGCAGAGCATTATGGGAGCTCTTCCACTGGGTAGAGTGAACACAAACTTCAGCACTGTATCAAAGGTTCCAGACGATGTAGAGTTTCGTGAACTGTATACCATTAGATGGACTGCACTTCTAATACCTCCAACCACCATCATAATAATCAACCTCATTGGTATAGTGGCTGGCTTCACAGATTCCATAAACAGTGGAGAACATTCTTGGGGAGCACTGCTTGGGAAACTCTTCTTTTCTTTATGGGTTATTGTCCATTTGTATCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTGCTCTTGGCTTCTATCTTCTCCTTGGTTTGGGTGAGAGTTGACCCTTTTGTGTTGAAAACCAAGGGACCTGATGTCAAGCAATGTGGAATCAGTTGTTGA	2976	0.4328	MEASTGLFAGTPNSKELVAIQGHDEPKPVKNLDGQLCEICGDSVGVTVEGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKHEEMQKGNMIHGDDDGNSESGLAKVTLRRNNCILQACSLRIVNGERLSTSVGEPAGAKLDDKENIDEWMLRQGNLWPETDASVDQEKAMKEPLSRKVAIPSGKLSPYRMMVVARFLLLLLFFQYRIFHPVPDAVGLWFISVTCEIWLALSWMIDQIPKWFPIDRETYLDRLSIRFEQENKPNMLSPIDIIVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFSRKWVPFCKKFSIEPRAPEKYFSEKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETPWPGNNPKDHPSMIQVLLPHIVGNELPCLVYTSREKRPAFQHHGKAGAINALLRVSAVLSNAPFVLNLDCNHYVNNCKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRHDRYANKNTVLFDINLRCLDGIQGPAYVGSACIFRRKSLTGSDSPVSSKRPSMVQVHSKQDENGEEASITATDEEKELLKSQMNDENKFGNSNPIMNPSLTEEGGIDPSSSQEVLLKEAIHVMGSKYEDRTLWGYEVGLSYGSIAADTLTSLKMHCHGWRSVYCMPKRDPFRGTAPINLTDRLNQVLRWAVGSLQILFSHHCPLLYGLSGGRLKGLQRIAYINSTVYPFSSIPLLIYCIVPAICLLTDKFITPSVGTFASLVFTALFISIFASAILELRWSGVSLEEWWRSQQFWVIGSVSANLFAVVQSIMGALPLGRVNTNFSTVSKVPDDVEFRELYTIRWTALLIPPTTIIIINLIGIVAGFTDSINSGEHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRVDPFVLKTKGPDVKQCGISC	991

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium7442g00013	991	Pfam	Zinc-binding RING-finger	27	104	IPR027934	-
	Vium7442g00013	991	FunFam	Cellulose synthase	19	110	-	-
	Vium7442g00013	991	CDD	mRING-HC-C4C4_CesA	35	85	-	-
	Vium7442g00013	991	MobiDBLite	consensus disorder prediction	581	611	-	-
	Vium7442g00013	991	Pfam	Cellulose synthase	299	596	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Vium7442g00013	991	Pfam	Cellulose synthase	603	985	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Vium7442g00013	991	SUPERFAMILY	RING/U-box	22	107	-	-
	Vium7442g00013	991	MobiDBLite	consensus disorder prediction	582	596	-	-
	Vium7442g00013	991	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	299	789	IPR029044	-
	Vium7442g00013	991	Coils	Coil	397	417	-	-
	Vium7442g00013	991	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	19	110	IPR013083	-
	Vium7442g00013	991	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	203	958	-	-
	Vium7442g00013	991	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	287	395	IPR029044	-
	Vium7442g00013	991	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	453	585	IPR029044	-
	Vium7442g00013	991	MobiDBLite	consensus disorder prediction	597	611	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium7442g00013	Vium-Chr7442	117617	122898	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium7442g00013	1	991	Cell Wall Biosynthesis	AT5G17420	62.233	0.0	1318

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium7442g00013	K10999		-	gmx:100777270	1774.99