Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium743g00006 ATGAAGAGGTCTAGAGATGAAGTTTTCACTAGTTGTTCTCAACTCAAACGACCTGTGGTGTCTGCCCGAGGAGAAGCGTCTGGGCAACCGCAGATGGCAAATGGAGGTGCTCAGAAATTGACAACTAATGATGCCCTAGCATATCTTAAAGCAGTAAAGGATATATTTCAAGATAAGAGGGACAAGTATGACGACTTTTTGGAGGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACCGCGGGTGTCATTGGAAGAGTGAAGGAACTCTTTAAAGGCCATAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAGGGGTATGAAATCACACTTCCGTCAGAGGATGAACAACCTGCTCCAAAGAAACCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAAATAAAGACTCGTTTTCAAGGCGACGATCATGTGTACAAATCATTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACCGAGGTCTACCAGGAGGTTGCTGCTATTTTCCAGGACCATCCTGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGACGCTTCTGCAGCTGCCTCTACTCATTATGCGTCTGCAAGAAATTCTATTCTTCGTGATAGGAGTTCAATGCCAACAGTACGGCCAATGCATGTTGAAAAGCGAGAAAGGACCATGGCTTCACATGGGGATCGTGATCCCAGTGTTGATCGTCCTGATCCAGATCAGGACAGAGGTTTATTAAGGATAGAAAAGGAGAGGAGACGTGCGGAGAAGGAAAAGGAACGCAGAGAAGATAGAGACAAGAGAGAACGCGAAAAGGATGATAGAGATTTTGAGCATGATAGGGAGCGATTTCCTCACAAACGTTCTCGTAAGGTTGAGGACTCTGGAGCTGAACCATTGCTTGATGCTGATGAAAATTTTGGTACGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAGTTCGCTTTCTGCGAAAAAGTCAAAGAAAAATTACGAAATCCTGATGACTATCAGGAATTTTTGAAGTGCTTACATATTTACAGCAGGGAAATAATTACCCGACAAGAGTTGCAGTCATTGATTGCTTTCTGA 1140 0.4149 MKRSRDEVFTSCSQLKRPVVSARGEASGQPQMANGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIGRVKELFKGHRDLILGFNTFLPKGYEITLPSEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHYASARNSILRDRSSMPTVRPMHVEKRERTMASHGDRDPSVDRPDPDQDRGLLRIEKERRRAEKEKERREDRDKREREKDDRDFEHDRERFPHKRSRKVEDSGAEPLLDADENFGTRPMSSTCDDKNSLKSMYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLIAF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium743g00006 379 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Vium743g00006 379 MobiDBLite consensus disorder prediction 208 327 - -
Vium743g00006 379 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Vium743g00006 379 SUPERFAMILY PAH2 domain 122 193 IPR036600 GO:0006355
Vium743g00006 379 SUPERFAMILY PAH2 domain 327 377 IPR036600 GO:0006355
Vium743g00006 379 Gene3D Paired amphipathic helix 327 379 IPR036600 GO:0006355
Vium743g00006 379 FunFam Paired amphipathic helix protein Sin3 44 106 - -
Vium743g00006 379 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Vium743g00006 379 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Vium743g00006 379 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Vium743g00006 379 PANTHER SIN3B-RELATED 38 375 IPR039774 GO:0003714
Vium743g00006 379 MobiDBLite consensus disorder prediction 218 305 - -
Vium743g00006 379 FunFam Paired amphipathic helix SIN3-like protein 123 194 - -
Vium743g00006 379 FunFam Paired amphipathic helix protein SIN3 326 379 - -
Vium743g00006 379 Coils Coil 252 281 - -
Vium743g00006 379 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
Vium743g00006 379 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium743g00006 Vium-Chr743 13781 18940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium743g00006 29 143 WRKY Transcription Factor Family AT4G12020 48.718 1.68e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium743g00006 PAH 2.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium743g00006 K11644 - gmx:100817626 640.958